Characterisation of the intestinal microbiota of commercially farmed saltwater crocodiles, Crocodylus porosus.

Autor: Willson NL; Institute for Future Farming Systems, Central Queensland University, Rockhampton, Queensland, 4702, Australia. nickyleewillson@gmail.com.; School of Animal and Veterinary Sciences, The University of Adelaide, Roseworthy, South Australia, 5371, Australia. nickyleewillson@gmail.com., Van TTH; School of Science, RMIT University, Bundoora, Victoria, 3083, Australia., Lever J; Koorana Crocodile Farm, Coowonga, Queensland, 4702, Australia., Moore RJ; School of Science, RMIT University, Bundoora, Victoria, 3083, Australia., Stanley D; Institute for Future Farming Systems, Central Queensland University, Rockhampton, Queensland, 4702, Australia.
Jazyk: angličtina
Zdroj: Applied microbiology and biotechnology [Appl Microbiol Biotechnol] 2019 Nov; Vol. 103 (21-22), pp. 8977-8985. Date of Electronic Publication: 2019 Oct 19.
DOI: 10.1007/s00253-019-10143-3
Abstrakt: The Australian saltwater crocodile (Crocodylus porosus) industry began commercially in the 1980s, producing skins for export and crocodile meat as a by-product. Industry research has thus far focused on strategies to improve production efficiency. In the current study, we utilised 16S rRNA sequencing to characterise the intestinal microbiome of Australian saltwater crocodiles. Samples were collected from 13 commercially farmed crocodiles from six sample sites along the length of the intestinal tract. The results indicate a similar microbiome composition to that found in the freshwater alligator, with the dominate phyla represented by Firmicutes, primarily Clostridia, and Fusobacteria, which appears to be distinct from mammalian, fish, and other reptile phyla which are generally dominated by Firmicutes and Bacteroidetes. The high abundance of 'pathogenic' bacteria, with no apparent consequence to the host's health, is of great interest and warrants further additional investigation. This will enable expansion of the current understanding of host immune function and how it is modified by host and intestinal microbiome interactions.
Databáze: MEDLINE
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