A Heme Propionate Staples the Structure of Cytochrome c for Methionine Ligation to the Heme Iron.

Autor: Deng Y; Department of Chemistry , Dartmouth College , Hanover , New Hampshire 03755 , United States., Weaver ML; Department of Chemistry and Biochemistry , Berry College , Mount Berry , Georgia 30149 , United States., Hoke KR; Department of Chemistry and Biochemistry , Berry College , Mount Berry , Georgia 30149 , United States., Pletneva EV; Department of Chemistry , Dartmouth College , Hanover , New Hampshire 03755 , United States.
Jazyk: angličtina
Zdroj: Inorganic chemistry [Inorg Chem] 2019 Oct 21; Vol. 58 (20), pp. 14085-14106. Date of Electronic Publication: 2019 Oct 07.
DOI: 10.1021/acs.inorgchem.9b02111
Abstrakt: Ligand-switch reactions at the heme iron are common in biological systems, but their mechanisms and the features of the polypeptide fold that support dual ligation are not well understood. In cytochrome c (cyt c ), two low-stability loops (Ω-loop C and Ω-loop D) are connected by the heme propionate HP6. At alkaline pH, the native Met80 ligand from Ω-loop D switches to a Lys residue from the same loop. Deprotonation of an as yet unknown group triggers the alkaline transition. We have created the two cyt c variants T49V/K79G and T78V/K79G with altered connections of these two loops to HP6. Electronic absorption, NMR, and EPR studies demonstrate that at pH 7.4 ferric forms of these variants are Lys-ligated, whereas ferrous forms maintain the native Met80 ligation. Measurements of protein stability, cyclic voltammetry, pH-jump and gated electron-transfer kinetics have revealed that these Thr to Val substitutions greatly affect the alkaline transition in both ferric and ferrous proteins. The substitutions modify the stability of the Met-ligated species and reduction potentials of the heme iron. The kinetics of ligand-switch processes are also altered, and analyses of these effects implicate redox-dependent differences in metal-ligand interactions and the role of the protein dynamics, including cross-talk between the two Ω-loops. With the two destabilized variants, it is possible to map energy levels for the Met- and Lys-ligated species in both ferric and ferrous proteins and assess the role of the protein scaffold in redox-dependent preferences for these two ligands. The estimated shift in the heme iron reduction potential upon deprotonation of the "trigger" group is consistent with those associated with deprotonation of an HP, suggesting that HP6, on its own or as a part of a hydrogen-bonded cluster, is a likely "trigger" for the Met to Lys ligand switch.
Databáze: MEDLINE