Geo-referenced population-specific microsatellite data across American continents, the MacroPopGen Database.

Autor: Lawrence ER; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada. elizabeth-lawrence@outlook.com., Benavente JN; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.; School of Environment, University of Auckland, PO Box 92019, Auckland, 1142, New Zealand., Matte JM; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada., Marin K; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.; Golder Associates, 7250, rue du Mile End, 3e étage, Montréal, Québec, H2R 3A4, Canada., Wells ZRR; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.; BT Engineering Inc., 100 Craig Henry Drive, Suite 201, Nepean, Ontario, K2G 5W3, Canada., Bernos TA; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada., Krasteva N; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada., Habrich A; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.; Department of Biology and Centre for Forest-Interdisciplinary Research, University of Winnipeg, Winnipeg, Manitoba, R3B 2E9, Canada., Nessel GA; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada., Koumrouyan RA; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada., Fraser DJ; Department of Biology, Concordia University, 7141 Sherbrooke Street W., Montreal, Quebec, H4B 1R6, Canada.
Jazyk: angličtina
Zdroj: Scientific data [Sci Data] 2019 Apr 03; Vol. 6 (1), pp. 14. Date of Electronic Publication: 2019 Apr 03.
DOI: 10.1038/s41597-019-0024-7
Abstrakt: Population genetic data from nuclear DNA has yet to be synthesized to allow broad scale comparisons of intraspecific diversity versus species diversity. The MacroPopGen database collates and geo-references vertebrate population genetic data across the Americas from 1,308 nuclear microsatellite DNA studies, 897 species, and 9,090 genetically distinct populations where genetic differentiation (F ST ) was measured. Caribbean populations were particularly distinguished from North, Central, and South American populations, in having higher differentiation (F ST  = 0.12 vs. 0.07-0.09) and lower mean numbers of alleles (MNA = 4.11 vs. 4.84-5.54). While mammalian populations had lower MNA (4.86) than anadromous fish, reptiles, amphibians, freshwater fish, and birds (5.34-7.81), mean heterozygosity was largely similar across groups (0.57-0.63). Mean F ST was consistently lowest in anadromous fishes (0.06) and birds (0.05) relative to all other groups (0.09-0.11). Significant differences in Family/Genera variance among continental regions or taxonomic groups were also observed. MacroPopGen can be used in many future applications including latitudinal analyses, spatial analyses (e.g. central-margin), taxonomic comparisons, regional assessments of anthropogenic impacts on biodiversity, and conservation of wild populations.
Databáze: MEDLINE