Application and optimization of CRISPR-Cas9-mediated genome engineering in axolotl (Ambystoma mexicanum).

Autor: Fei JF; Institute for Brain Research and Rehabilitation (IBRR), Guangdong Key Laboratory of Mental Health and Cognitive Science, South China Normal University, Guangzhou, China. jifengfei@m.scnu.edu.cn., Lou WP; School of Life Sciences, South China Normal University, Guangzhou, China.; The Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria., Knapp D; DFG Center for Regenerative Therapies, Dresden (CRTD), Technische Universität Dresden, Dresden, Germany., Murawala P; The Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria., Gerber T; Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Taniguchi Y; The Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria., Nowoshilow S; The Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria., Khattak S; DFG Center for Regenerative Therapies, Dresden (CRTD), Technische Universität Dresden, Dresden, Germany., Tanaka EM; The Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria.
Jazyk: angličtina
Zdroj: Nature protocols [Nat Protoc] 2018 Dec; Vol. 13 (12), pp. 2908-2943.
DOI: 10.1038/s41596-018-0071-0
Abstrakt: Genomic manipulation is essential to the use of model organisms to understand development, regeneration and adult physiology. The axolotl (Ambystoma mexicanum), a type of salamander, exhibits an unparalleled regenerative capability in a spectrum of complex tissues and organs, and therefore serves as a powerful animal model for dissecting mechanisms of regeneration. We describe here an optimized stepwise protocol to create genetically modified axolotls using the CRISPR-Cas9 system. The protocol, which takes 7-8 weeks to complete, describes generation of targeted gene knockouts and knock-ins and includes site-specific integration of large targeting constructs. The direct use of purified CAS9-NLS (CAS9 containing a C-terminal nuclear localization signal) protein allows the prompt formation of guide RNA (gRNA)-CAS9-NLS ribonucleoprotein (RNP) complexes, which accelerates the creation of double-strand breaks (DSBs) at targeted genomic loci in single-cell-stage axolotl eggs. With this protocol, a substantial number of F 0 individuals harboring a homozygous-type frameshift mutation can be obtained, allowing phenotype analysis in this generation. In the presence of targeting constructs, insertions of exogenous genes into targeted axolotl genomic loci can be achieved at efficiencies of up to 15% in a non-homologous end joining (NHEJ) manner. Our protocol bypasses the long generation time of axolotls and allows direct functional analysis in F 0 genetically manipulated axolotls. This protocol can be potentially applied to other animal models, especially to organisms with a well-characterized transcriptome but lacking a well-characterized genome.
Databáze: MEDLINE