Data on degradome sequencing and analysis from mock-inoculated and Fusarium oxysporum treated leaves samples in Persicaria minor .

Autor: Samad AFA; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia., Sajad M; Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.; Department of Plant Breeding and Genetics, University College of Agriculture & Environmental Sciences, The Islamia University of Bahawalpur, Punjab, Pakistan., Jani J; Borneo Medical and Healthy Research Center Faculty of Medical and Healthy Science, Universiti Malaysia Sabah, Malaysia., Murad AMA; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia., Ismail I; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.; Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.
Jazyk: angličtina
Zdroj: Data in brief [Data Brief] 2018 Aug 20; Vol. 20, pp. 555-557. Date of Electronic Publication: 2018 Aug 20 (Print Publication: 2018).
DOI: 10.1016/j.dib.2018.08.034
Abstrakt: Degradome sequencing referred as parallel analysis of RNA ends (PARE) by modifying 5'-rapid amplification of cDNA ends (RACE) with deep sequencing method. Deep sequencing of 5' products allow the determination of cleavage sites through the mapping of degradome fragments against small RNAs (miRNA or siRNA) on a large scale. Here, we carried out degradome sequencing in medicinal plant, Persicaria minor , to identify cleavage sites in small RNA libraries in control (mock-inoculated) and Fusarium oxysporum treated plants. The degradome library consisted of both control and treated samples which were pooled together during library preparation and named as D4. The D4 dataset have been deposited at GenBank under accession number SRX3921398, https://www.ncbi.nlm.nih.gov/sra/SRX3921398.
Databáze: MEDLINE
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