Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments.

Autor: Berube PM; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Biller SJ; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Hackl T; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Hogle SL; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Satinsky BM; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Becker JW; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Braakman R; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Collins SB; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Kelly L; Department of Systems and Computational Biology, Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA., Berta-Thompson J; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Coe A; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Bergauer K; Department of Limnology and Bio-Oceanography, University of Vienna, Vienna 1090, Austria., Bouman HA; Department of Earth Sciences, University of Oxford, Oxford OX1 3AN, UK., Browning TJ; Marine Biogeochemistry Division, GEOMAR Helmholtz Centre for Ocean Research, Kiel 24148, Germany., De Corte D; Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology, Yokosuka 237-0061, Japan., Hassler C; Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva, Geneva 1211, Switzerland., Hulata Y; Faculty of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel., Jacquot JE; Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA., Maas EW; Ministry for Primary Industries, Napier 4144, New Zealand., Reinthaler T; Department of Limnology and Bio-Oceanography, University of Vienna, Vienna 1090, Austria., Sintes E; Department of Limnology and Bio-Oceanography, University of Vienna, Vienna 1090, Austria., Yokokawa T; Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology, Yokosuka 237-0061, Japan., Lindell D; Faculty of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel., Stepanauskas R; Single Cell Genomics Center, Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544, USA., Chisholm SW; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Jazyk: angličtina
Zdroj: Scientific data [Sci Data] 2018 Sep 04; Vol. 5, pp. 180154. Date of Electronic Publication: 2018 Sep 04.
DOI: 10.1038/sdata.2018.154
Abstrakt: Prochlorococcus and Synechococcus are the dominant primary producers in marine ecosystems and perform a significant fraction of ocean carbon fixation. These cyanobacteria interact with a diverse microbial community that coexists with them. Comparative genomics of cultivated isolates has helped address questions regarding patterns of evolution and diversity among microbes, but the fraction that can be cultivated is miniscule compared to the diversity in the wild. To further probe the diversity of these groups and extend the utility of reference sequence databases, we report a data set of single cell genomes for 489 Prochlorococcus, 50 Synechococcus, 9 extracellular virus particles, and 190 additional microorganisms from a diverse range of bacterial, archaeal, and viral groups. Many of these uncultivated single cell genomes are derived from samples obtained on GEOTRACES cruises and at well-studied oceanographic stations, each with extensive suites of physical, chemical, and biological measurements. The genomic data reported here greatly increases the number of available Prochlorococcus genomes and will facilitate studies on evolutionary biology, microbial ecology, and biological oceanography.
Databáze: MEDLINE