Strand Displacement Probes Combined with Isothermal Nucleic Acid Amplification for Instrument-Free Detection from Complex Samples.

Autor: Phillips EA; Weldon School of Biomedical Engineering , Purdue University , West Lafayette , Indiana 47907 , United States., Moehling TJ; Weldon School of Biomedical Engineering , Purdue University , West Lafayette , Indiana 47907 , United States., Bhadra S; Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, and Department of Chemistry , The University of Texas at Austin , Austin , Texas 78712 , United States., Ellington AD; Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, and Department of Chemistry , The University of Texas at Austin , Austin , Texas 78712 , United States., Linnes JC; Weldon School of Biomedical Engineering , Purdue University , West Lafayette , Indiana 47907 , United States.
Jazyk: angličtina
Zdroj: Analytical chemistry [Anal Chem] 2018 Jun 05; Vol. 90 (11), pp. 6580-6586. Date of Electronic Publication: 2018 May 08.
DOI: 10.1021/acs.analchem.8b00269
Abstrakt: Sensitive and specific detection of pathogens via nucleic acid amplification is currently constrained to laboratory settings and portable equipment with costly fluorescent detectors. Nucleic acid-detecting lateral flow immunoassay strips (LFIAs) offer a low-cost visual transduction strategy at points of need. Unfortunately, these LFIAs frequently detect amplification byproducts that can yield spurious results which can only be deciphered through statistical analysis. We integrated customizable strand displacement probes into standard loop mediated isothermal amplification (LAMP) assays to prevent byproduct capture on commercial LFIAs. We find that combining strand displacement with LAMP (SD-LAMP) yields LFIA test band intensities that can be unequivocally interpreted by human subjects without additional instrumentation, thereby alleviating the need for a portable reader's analysis. Using SD-LAMP, we capture target amplicons on commercially available LFIAs from as few as 3.5 Vibrio cholerae and 2 750 Escherichia coli bacteria without false positive or false negative interpretation. Moreover, we demonstrate that LFIA capture of SD-LAMP products remain specific even in the presence of complex sample matrixes, providing a significant step toward reliable instrument-free pathogen detection outside of laboratories.
Databáze: MEDLINE