Xenbase: a genomic, epigenomic and transcriptomic model organism database.

Autor:	Karimi K; Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada., Fortriede JD; Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA., Lotay VS; Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada., Burns KA; Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA., Wang DZ; Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada., Fisher ME; Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA., Pells TJ; Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada., James-Zorn C; Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA., Wang Y; Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada., Ponferrada VG; Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA., Chu S; Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada., Chaturvedi P; Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA., Zorn AM; Cincinnati Children's Hospital, Division of Developmental Biology, 3333 Burnet Avenue, Cincinnati, OH 45229, USA., Vize PD; Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alberta T2N1N4, Canada.
Jazyk:	angličtina
Zdroj:	Nucleic acids research [Nucleic Acids Res] 2018 Jan 04; Vol. 46 (D1), pp. D861-D868.
DOI:	10.1093/nar/gkx936
Abstrakt:	Xenbase (www.xenbase.org) is an online resource for researchers utilizing Xenopus laevis and Xenopus tropicalis, and for biomedical scientists seeking access to data generated with these model systems. Content is aggregated from a variety of external resources and also generated by in-house curation of scientific literature and bioinformatic analyses. Over the past two years many new types of content have been added along with new tools and functionalities to reflect the impact of high-throughput sequencing. These include new genomes for both supported species (each with chromosome scale assemblies), new genome annotations, genome segmentation, dynamic and interactive visualization for RNA-Seq data, updated ChIP-Seq mapping, GO terms, protein interaction data, ORFeome support, and improved connectivity to other biomedical and bioinformatic resources. (© The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.)
Databáze:	MEDLINE
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