Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Autor: Varshney RK; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Shi C; BGI-Shenzhen, Shenzhen, China., Thudi M; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Mariac C; Institut de recherche pour le développement (IRD), Montpellier, France., Wallace J; University of Georgia, Athens, Georgia, USA., Qi P; University of Georgia, Athens, Georgia, USA., Zhang H; BGI-Shenzhen, Shenzhen, China., Zhao Y; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany., Wang X; University of Georgia, Athens, Georgia, USA., Rathore A; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Srivastava RK; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Chitikineni A; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Fan G; BGI-Shenzhen, Shenzhen, China., Bajaj P; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Punnuri S; Fort Valley State University, Fort Valley, Georgia, USA., Gupta SK; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Wang H; Cornell University, Ithaca, New York, USA., Jiang Y; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany., Couderc M; Institut de recherche pour le développement (IRD), Montpellier, France., Katta MAVSK; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Paudel DR; University of Florida, Gainesville, Florida, USA., Mungra KD; Junagadh Agricultural University, Jamnagar, Gujarat, India., Chen W; BGI-Shenzhen, Shenzhen, China., Harris-Shultz KR; United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Tifton, Georgia, USA., Garg V; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Desai N; Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria.; Amity University, Mumbai, Maharashtra, India., Doddamani D; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Kane NA; Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Senegal., Conner JA; University of Georgia, Tifton, Georgia, USA., Ghatak A; Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria.; School of Bioinformatics and Biotechnology, D.Y. Patil University, Mumbai, Maharashtra, India., Chaturvedi P; Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria., Subramaniam S; University of Arizona, Tucson, Arizona, USA.; Phoenix Bioinformatics, Redwood City, California, USA., Yadav OP; Indian Council of Agricultural Research (ICAR)-Central Arid Zone Research Institute (CAZRI), Jodhpur, Rajasthan, India., Berthouly-Salazar C; Institut de recherche pour le développement (IRD), Montpellier, France.; Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux, Centre de Recherche de Bel Air, Dakar, Senegal., Hamidou F; ICRISAT Sahelian Center, Niamey, Niger.; Faculty of Sciences and Techniques, University Abdou Moumouni, Niamey, Niger., Wang J; University of Florida, Gainesville, Florida, USA., Liang X; BGI-Shenzhen, Shenzhen, China., Clotault J; Institut de recherche pour le développement (IRD), Montpellier, France.; University of Montpellier, Montpellier, France., Upadhyaya HD; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Cubry P; Institut de recherche pour le développement (IRD), Montpellier, France., Rhoné B; Institut de recherche pour le développement (IRD), Montpellier, France.; Laboratoire de biométrie et Biologie Evolutive, Université Lyon 1, Villeurbanne, France., Gueye MC; Institut Sénégalais de Recherches Agricoles (ISRA), Dakar, Senegal., Sunkar R; Oklahoma State University, Stillwater, Oklahoma, USA., Dupuy C; Institut des Mondes Africains (IMAf), Paris, France., Sparvoli F; CNR-Consiglio Nazionale delle Ricerche, Istituto di Biologia e Biotecnologia Agraria, Milan, Italy., Cheng S; BGI-Shenzhen, Shenzhen, China., Mahala RS; Pioneer Hi-Bred Private Limited, Hyderabad, Telangana State, India., Singh B; Fort Valley State University, Fort Valley, Georgia, USA., Yadav RS; Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Ceredigion, UK., Lyons E; University of Arizona, Tucson, Arizona, USA., Datta SK; Visva-Bharati, Santiniketan, West Bengal, India., Hash CT; ICRISAT Sahelian Center, Niamey, Niger., Devos KM; University of Georgia, Athens, Georgia, USA., Buckler E; Cornell University, Ithaca, New York, USA.; USDA-ARS, Ithaca, New York, USA., Bennetzen JL; University of Georgia, Athens, Georgia, USA., Paterson AH; University of Georgia, Athens, Georgia, USA., Ozias-Akins P; University of Georgia, Tifton, Georgia, USA., Grando S; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana State, India., Wang J; BGI-Shenzhen, Shenzhen, China., Mohapatra T; Indian Council of Agricultural Research (ICAR), New Delhi, India., Weckwerth W; Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria.; Vienna Metabolomics Center (VIME), University of Vienna, Vienna, Austria., Reif JC; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany., Liu X; BGI-Shenzhen, Shenzhen, China.; BGI-Qingdao, Qingdao, China., Vigouroux Y; Institut de recherche pour le développement (IRD), Montpellier, France.; University of Montpellier, Montpellier, France., Xu X; BGI-Shenzhen, Shenzhen, China.; BGI-Qingdao, Qingdao, China.; China National GeneBank (CNGB), Shenzen, China.
Jazyk: angličtina
Zdroj: Nature biotechnology [Nat Biotechnol] 2017 Oct; Vol. 35 (10), pp. 969-976. Date of Electronic Publication: 2017 Sep 18.
DOI: 10.1038/nbt.3943
Abstrakt: Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report the ∼1.79 Gb draft whole genome sequence of reference genotype Tift 23D 2 B 1 -P1-P5, which contains an estimated 38,579 genes. We highlight the substantial enrichment for wax biosynthesis genes, which may contribute to heat and drought tolerance in this crop. We resequenced and analyzed 994 pearl millet lines, enabling insights into population structure, genetic diversity and domestication. We use these resequencing data to establish marker trait associations for genomic selection, to define heterotic pools, and to predict hybrid performance. We believe that these resources should empower researchers and breeders to improve this important staple crop.
Databáze: MEDLINE