Small RNA sequencing for secondary metabolite analysis in Persicaria minor .

Autor: Samad AFA; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia., Nazaruddin N; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.; Department of Chemistry, Faculty of Mathematics and Natural Sciences, University of Syiah Kuala, Darussalam, Banda Aceh 23111, Indonesia., Sajad M; Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.; Department of Plant Breeding and Genetics, University College of Agriculture & Environmental Sciences, The Islamia University of Bahawalpur, Punjab, Pakistan., Jani J; BioEasy Sdn. Bhd. and ScienceVision Sdn. Bhd., Setia Alam, Seksyen U13, 40170 Shah Alam, Selangor, Malaysia., Murad AMA; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia., Zainal Z; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.; Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia., Ismail I; School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.; Institute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.
Jazyk: angličtina
Zdroj: Genomics data [Genom Data] 2017 May 13; Vol. 13, pp. 3-4. Date of Electronic Publication: 2017 May 13 (Print Publication: 2017).
DOI: 10.1016/j.gdata.2017.05.014
Abstrakt: Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor , for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 ( Fusarium -treated), SRX2645685 ( Fusarium -treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected).
Databáze: MEDLINE