A snapshot on prokaryotic diversity of the Solimões River basin (Amazon, Brazil).

Autor: Toyama D; Laboratório de Biologia Molecular, Departamento de Genética e Evolução, , , Brasil., Santos-Júnior CD; Laboratório de Biologia Molecular, Departamento de Genética e Evolução, , , Brasil., Kishi LT; Laboratório de Biologia Molecular, Departamento de Genética e Evolução, , , Brasil., Oliveira TCS; Departamento de Química, , , Brasil., Garcia JW; Noosfera Projetos Especiais Ltda., , Brasil., Sarmento H; Laboratório de Biodiversidade e Processos Microbianos, Departamento de Hidrobiologia, , , Brasil., Miranda FP; Petróleo Brasileiro S.A., , , Brasil., Henrique-Silva F; Laboratório de Biologia Molecular, Departamento de Genética e Evolução, , , Brasil dfhs@ufscar.br.
Jazyk: angličtina
Zdroj: Genetics and molecular research : GMR [Genet Mol Res] 2017 May 18; Vol. 16 (2). Date of Electronic Publication: 2017 May 18.
DOI: 10.4238/gmr16029567
Abstrakt: The Amazon region has the largest hydrographic basin on the planet and 
is well known for its huge biodiversity of plants and animals. However, 
there is a lack of studies on aquatic microbial biodiversity in the 
Solimões River, one of its main water courses. To investigate the 
microbial biodiversity of this region, we performed 16S rRNA gene clone 
libraries from Solimões River and adjacent rivers and lakes. Our question was which microorganisms inhabit the different types of aquatic 
environments in this part of the basin, and how diversity varies among 
these environments (rivers and lakes). The microbial 
diversity generating 13 clone libraries of the bacterial 16S rRNA gene 
and 5 libraries of the archaeal 16S rRNA gene was assessed. Diversity measured by several alpha diversity indices (ACE, Chao, Shannon and Simpson) revealed significant differences in diversity indices between lake and river samples. The site with higher microbial diversity was in the Solimões River (4S), downstream the confluence with Purus River. The most common bacterial taxon was the cosmopolitan Polynucleobacter genus, widely observed in all samples. The phylum Thaumarchaeota was the prevailing archaeal taxon. Our results provide the first insight into the microbial diversity of the world's largest river basin.
Databáze: MEDLINE