Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.

Autor:	Oughtred R; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Chatr-aryamontri A; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada;, Breitkreutz BJ; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Chang CS; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Rust JM; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Theesfeld CL; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Heinicke S; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Breitkreutz A; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Chen D; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada;, Hirschman J; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Kolas N; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Livstone MS; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Nixon J; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom., O'Donnell L; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Ramage L; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom., Winter A; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom., Reguly T; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Sellam A; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada;, Stark C; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Boucher L; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Dolinski K; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Tyers M; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom.
Jazyk:	angličtina
Zdroj:	Cold Spring Harbor protocols [Cold Spring Harb Protoc] 2016 Jan 04; Vol. 2016 (1), pp. pdb.prot088880. Date of Electronic Publication: 2016 Jan 04.
DOI:	10.1101/pdb.prot088880
Abstrakt:	The BioGRID database is an extensive repository of curated genetic and protein interactions for the budding yeast Saccharomyces cerevisiae, the fission yeast Schizosaccharomyces pombe, and the yeast Candida albicans SC5314, as well as for several other model organisms and humans. This protocol describes how to use the BioGRID website to query genetic or protein interactions for any gene of interest, how to visualize the associated interactions using an embedded interactive network viewer, and how to download data files for either selected interactions or the entire BioGRID interaction data set. (© 2016 Cold Spring Harbor Laboratory Press.)
Databáze:	MEDLINE
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