Non-contiguous-Finished Genome Sequence and Description of Paenibacillus camerounensis sp. nov.

Autor: Keita MB; Faculté de médecine, URMITE, Aix-Marseille Université, Marseille, France., Padhmanabhan R; Faculté de médecine, URMITE, Aix-Marseille Université, Marseille, France., Robert C; Faculté de médecine, URMITE, Aix-Marseille Université, Marseille, France., Delaporte E; IRD, University Montpellier 1, Montpellier, France., Raoult D; Faculté de médecine, URMITE, Aix-Marseille Université, Marseille, France.; King Fahad Medical Research Center, King Abdul Aziz University, Jeddah, Saudi Arabia., Fournier PE; Faculté de médecine, URMITE, Aix-Marseille Université, Marseille, France., Bittar F; Faculté de médecine, URMITE, Aix-Marseille Université, Marseille, France. fadi.bittar@univ-amu.fr.
Jazyk: angličtina
Zdroj: Microbial ecology [Microb Ecol] 2016 May; Vol. 71 (4), pp. 990-8. Date of Electronic Publication: 2015 Dec 29.
DOI: 10.1007/s00248-015-0722-4
Abstrakt: Strain G4(T) was isolated from the stool sample of a wild gorilla (Gorilla gorilla gorilla) from Cameroon. It is a facultative anaerobic, Gram-negative, rod-shaped bacterium. This strain exhibits a 16S rRNA nucleotide sequence similarity of 97.48% with Paenibacillus typhae, the phylogenetically closest species with standing nomenclature. Moreover, the strain G4(T) presents some phenotypic differences when compared to other Paenibacillus species and shows a low MALDI-TOF Mass Spectrometry score that does not allow any identification. Thus, it is likely that this strain represents a new species. Here, we describe the characteristics of this organism, complete genome sequence, and annotation. The 6,933,847 bp size genome (1 chromosome but no plasmid) contains 5972 protein-coding genes and 54 RNAs genes, including 44 tRNA genes. In addition, digital DNA-DNA hybridization values for the genome of the strain G4(T) against the closest Paenibacillus genomes range between 19.7 and 22.1, once again confirming its new status as a new species. On the basis of these polyphasic data, consisting of phenotypic and genomic analyses, we propose the creation of Paenibacillus camerounensis sp. nov. that contains the strain G4(T).
Databáze: MEDLINE