Multiple ligand simultaneous docking (MLSD): A novel approach to study the effect of inhibitors on substrate binding to PPO.

Autor: Raghavendra S; College of Horticulture, University of Horticulture Sciences, Bagalkot 587102, Karnataka, India., Aditya Rao SJ; Molecular Biomedicine Laboratory, PG Department of Biotechnology, Sahyadri Science College, Shimoga 577203, Karnataka, India. Electronic address: adityaraosj@gmail.com., Kumar V; Department of Biochemistry, Davangere University, Shivagangothri, Davangere 577002, Karnataka, India., Ramesh CK; Molecular Biomedicine Laboratory, PG Department of Biotechnology, Sahyadri Science College, Shimoga 577203, Karnataka, India.
Jazyk: angličtina
Zdroj: Computational biology and chemistry [Comput Biol Chem] 2015 Dec; Vol. 59 Pt A, pp. 81-6. Date of Electronic Publication: 2015 Sep 18.
DOI: 10.1016/j.compbiolchem.2015.09.008
Abstrakt: Multiple ligand simultaneous docking, a computational approach is used to study the concurrent interactions between substrate and the macromolecule binding together in the presence of an inhibitor. The present investigation deals with the study of the effect of different inhibitors on binding of substrate to the protein Polyphenoloxidase (PPO). The protein was isolated from Mucuna pruriens and confirmed as tyrosinases involved in L-DOPA production. The activity was measured using different inhibitors at different concentrations taking catechol as substrate. A high-throughput binding study was conducted to compare the binding orientations of individual ligands and multiple ligands employing Autodock 4.2. The results of single substrate docking showed a better binding of urea with the binding energy of -3.48 kJ mol(-1) and inter molecular energy of -3.48 kJ mol(-1) while the results of MLSD revealed that ascorbic acid combined with the substrate showed better inhibition with a decreased binding energy of -2.37 kJ mol(-1).
(Copyright © 2015. Published by Elsevier Ltd.)
Databáze: MEDLINE
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