| Autor: |
Aviziotis IG; School of Chemical Engineering, National Technical University of Athens, Athens, Greece., Kavousanakis ME; School of Chemical Engineering, National Technical University of Athens, Athens, Greece., Boudouvis AG; School of Chemical Engineering, National Technical University of Athens, Athens, Greece. |
| Jazyk: |
angličtina |
| Zdroj: |
PloS one [PLoS One] 2015 Jul 17; Vol. 10 (7), pp. e0132946. Date of Electronic Publication: 2015 Jul 17 (Print Publication: 2015). |
| DOI: |
10.1371/journal.pone.0132946 |
| Abstrakt: |
Heterogeneity in cell populations originates from two fundamentally different sources: the uneven distribution of intracellular content during cell division, and the stochastic fluctuations of regulatory molecules existing in small amounts. Discrete stochastic models can incorporate both sources of cell heterogeneity with sufficient accuracy in the description of an isogenic cell population; however, they lack efficiency when a systems level analysis is required, due to substantial computational requirements. In this work, we study the effect of cell heterogeneity in the behaviour of isogenic cell populations carrying the genetic network of lac operon, which exhibits solution multiplicity over a wide range of extracellular conditions. For such systems, the strategy of performing solely direct temporal solutions is a prohibitive task, since a large ensemble of initial states needs to be tested in order to drive the system--through long time simulations--to possible co-existing steady state solutions. We implement a multiscale computational framework, the so-called "equation-free" methodology, which enables the performance of numerical tasks, such as the computation of coarse steady state solutions and coarse bifurcation analysis. Dynamically stable and unstable solutions are computed and the effect of intrinsic noise on the range of bistability is efficiently investigated. The results are compared with the homogeneous model, which neglects all sources of heterogeneity, with the deterministic cell population balance model, as well as with a stochastic model neglecting the heterogeneity originating from intrinsic noise effects. We show that when the effect of intrinsic source of heterogeneity is intensified, the bistability range shifts towards higher extracellular inducer concentration values. |
| Databáze: |
MEDLINE |
| Externí odkaz: |
|
