Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates.

Autor: Sergejeva M; Institute of Experimental and Clinical Pharmacology and Toxicology, Friedrich-Alexander University, Fahrstr. 17, 91054 Erlangen, Germany. Electronic address: marina.sergeeva@fau.de., Papp EA; Department of Anatomy, Institute of Basic Medical Sciences, University of Oslo, P.O. Box 1105, Blindern, 0317 Oslo, Norway., Bakker R; Donders Institute for Brain, Cognition and Behaviour, Radboud University, P.O. Box 9010, 6500 GL Nijmegen, Netherlands; Institute of Neuroscience and Medicine (INM-6), Research Center Jülich, 52425 Jülich, Germany., Gaudnek MA; Institute of Experimental and Clinical Pharmacology and Toxicology, Friedrich-Alexander University, Fahrstr. 17, 91054 Erlangen, Germany., Okamura-Oho Y; Brain Research Network (BreNt) and RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan., Boline J; Informed Minds, 2100 NE 16th Ave, Wilton Manors, FL 33305, USA., Bjaalie JG; Department of Anatomy, Institute of Basic Medical Sciences, University of Oslo, P.O. Box 1105, Blindern, 0317 Oslo, Norway., Hess A; Institute of Experimental and Clinical Pharmacology and Toxicology, Friedrich-Alexander University, Fahrstr. 17, 91054 Erlangen, Germany.
Jazyk: angličtina
Zdroj: Journal of neuroscience methods [J Neurosci Methods] 2015 Jan 30; Vol. 240, pp. 161-9. Date of Electronic Publication: 2014 Nov 18.
DOI: 10.1016/j.jneumeth.2014.11.005
Abstrakt: Background: Assignment of anatomical reference is a key step in integration of the rapidly expanding collection of rodent brain data. Landmark-based registration facilitates spatial anchoring of diverse types of data not suitable for automated methods operating on voxel-based image information.
New Tool: Here we propose a standardized set of anatomical landmarks for registration of whole brain imaging datasets from the mouse and rat brain, and in particular for integration of experimental image data in Waxholm Space (WHS).
Results: Sixteen internal landmarks of the C57BL/6J mouse brain have been reliably identified: by different individuals, independent of their experience in anatomy; across different MRI contrasts (T1, T2, T2(*)) and other modalities (Nissl histology and block-face anatomy); in different specimens; in different slice acquisition angles; and in different image resolutions. We present a registration example between T1-weighted MRI and the mouse WHS template using these landmarks and reaching fairly high accuracy. Landmark positions identified in the mouse WHS template are shared through the Scalable Brain Atlas, accompanied by graphical and textual guidelines for locating each landmark. We identified 14 of the 16 landmarks in the WHS template for the Sprague Dawley rat.
Comparison With Existing Methods: This landmark set can withstand substantial differences in acquisition angle, imaging modality, and is less vulnerable to subjectivity.
Conclusions: This facilitates registration of multimodal 3D brain data to standard coordinate spaces for mouse and rat brain taking a step toward the creation of a common rodent reference system; raising data sharing to a qualitatively higher level.
(Copyright © 2014 Elsevier B.V. All rights reserved.)
Databáze: MEDLINE
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