Next generation sequence analysis of the transcriptome of Sydney rock oysters (Saccostrea glomerata) exposed to a range of environmental stressors.

Autor: Hook SE; CSIRO Centre for Environmental Contaminants Research, Land and Water, Locked Bag 2007, Kirrawee, NSW 2232, Australia. Electronic address: Sharon.Hook@csiro.au., Johnston EL; Evolution and Ecology Research Centre School of Biological, Earth and Environmental Sciences, UNSW Australia, Sydney, NSW 2052, Australia., Nair S; Department of Biological Sciences, Macquarie University, Sydney, 2109 NSW, Australia., Roach AC; NSW Dept of Environment, Climate Change & Water (DECCW), Australia., Moncuquet P; CSIRO Digital Productivity and Services, Acton, ACT 2601, Australia., Twine NA; NSW Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia., Raftos DA; Department of Biological Sciences, Macquarie University, Sydney, 2109 NSW, Australia.
Jazyk: angličtina
Zdroj: Marine genomics [Mar Genomics] 2014 Dec; Vol. 18 Pt B, pp. 109-11. Date of Electronic Publication: 2014 Aug 21.
DOI: 10.1016/j.margen.2014.08.003
Abstrakt: Sydney rock oysters (Saccostrea glomerata) were exposed to environmental stressors at contaminated field sites or in a controlled laboratory setting. RNA seq transcriptome data were generated for the gill and digestive gland using Roche's 454 pyrosequencing technology. 28,685 contigs were de novo assembled which encoded 11,671 different protein products. The data will act as a reference for future studies in ecology, immunology and environmental toxicology.
(Crown Copyright © 2014. Published by Elsevier B.V. All rights reserved.)
Databáze: MEDLINE
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