Ribosome purification approaches for studying interactions of regulatory proteins and RNAs with the ribosome.

Autor: Mehta P; Department of Biochemistry and Cell Biology, Stony Brook University, Centers for Molecular Medicine, Stony Brook, NY, USA., Woo P, Venkataraman K, Karzai AW
Jazyk: angličtina
Zdroj: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2012; Vol. 905, pp. 273-89.
DOI: 10.1007/978-1-61779-949-5_18
Abstrakt: Ribosomes are large complexes of RNA and protein that perform the essential task of protein synthesis in the cell. Ribosomes also serve as the initiation point for several translation-associated functions. To perform these tasks efficiently, ribosomes interact with a myriad of nonribosomal proteins and RNAs. Given that most of these interactions are transient, purification of the interacting factors in complex with the ribosome can be a challenging undertaking. Here, we review methods commonly used to isolate ribosomes and study ribosome-associated factors. We also discuss crucial parameters for designing and executing ribosome association studies. Finally, we present a detailed protocol for reporter based enrichment assays that are employed to selectively isolate ribosomes translating a particular message of interest. These protocols can be used to study a wide range of ribosome-associated functions.
Databáze: MEDLINE