Shape shifting leads to small-molecule allosteric drug discovery.

Autor: Lawrence SH; Fox Chase Cancer Center, Philadelphia, PA 19111, USA., Ramirez UD, Tang L, Fazliyez F, Kundrat L, Markham GD, Jaffe EK
Jazyk: angličtina
Zdroj: Chemistry & biology [Chem Biol] 2008 Jun; Vol. 15 (6), pp. 586-96.
DOI: 10.1016/j.chembiol.2008.04.012
Abstrakt: Enzymes that regulate their activity by modulating an equilibrium of alternate, nonadditive, functionally distinct oligomeric assemblies (morpheeins) constitute a recently described mode of allostery. The oligomeric equilibrium for porphobilinogen synthase (PBGS) consists of high-activity octamers, low-activity hexamers, and two dimer conformations. A phylogenetically diverse allosteric site specific to hexamers is proposed as an inhibitor binding site. Inhibitor binding is predicted to draw the oligomeric equilibrium toward the low-activity hexamer. In silico docking enriched a selection from a small-molecule library for compounds predicted to bind to this allosteric site. In vitro testing of selected compounds identified one compound whose inhibition mechanism is species-specific conversion of PBGS octamers to hexamers. We propose that this strategy for inhibitor discovery can be applied to other proteins that use the morpheein model for allosteric regulation.
Databáze: MEDLINE