Group additivity calculations of the thermodynamic properties of unfolded proteins in aqueous solution: a critical comparison of peptide-based and HKF models.

Autor: Hakin AW; Department of Chemistry and Biochemistry, University of Lethbridge, Alberta, Canada. hakin@uleth.ca, Hedwig GR
Jazyk: angličtina
Zdroj: Biophysical chemistry [Biophys Chem] 2001 Feb 15; Vol. 89 (2-3), pp. 253-64.
DOI: 10.1016/s0301-4622(00)00229-5
Abstrakt: A recent paper in this journal [Amend and Helgeson, Biophys. Chem. 84 (2000) 105] presented a new group additivity model to calculate various thermodynamic properties of unfolded proteins in aqueous solution. The parameters given for the revised Helgeson-Kirkham-Flowers (HKF) equations of state for all the constituent groups of unfolded proteins can be used, in principle, to calculate the partial molar heat capacity, C(o)p.2, and volume, V2(0), at infinite dilution of any polypeptide. Calculations of the values of C(o)p.2 and V2(0) for several polypeptides have been carried out to test the predictive utility of the HKF group additivity model. The results obtained are in very poor agreement with experimental data, and also with results calculated using a peptide-based group additivity model. A critical assessment of these two additivity models is presented.
Databáze: MEDLINE
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