Structure and mechanism of formation of the H-y5 isomer of an intramolecular DNA triple helix.

Autor: van Dongen MJ; NSR Centre for Molecular Structure, Design, and Synthesis, Laboratory of Biophysical Chemistry, University of Nijmegen, The Netherlands., Doreleijers JF, van der Marel GA, van Boom JH, Hilbers CW, Wijmenga SS
Jazyk: angličtina
Zdroj: Nature structural biology [Nat Struct Biol] 1999 Sep; Vol. 6 (9), pp. 854-9.
DOI: 10.1038/12313
Abstrakt: H-DNA, thought to play a regulatory role in transcription, exists in two isomeric forms, H-y3 and H-y5. We present the first solution structure of a DNA fragment representing the H-y5 fold. The structure shows the H-y5 triple helix, and for the first time how in an H-DNA isomer the purine strand extension interacts with the triplex loop. It gives direct insight into the mechanism of H-DNA formation, and explains a host of biochemical and biophysical data on the relative stability of the H-DNA isomers. In addition, the observed interaction of the purine strand extension and the triplex loop provides new clues to the design of clamp-type triple helix-forming oligonucleotides.
Databáze: MEDLINE