Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer

Autor: Varun Chalivendra, Krishna Latha Kanchi, Michael D. Onken, Ashley E. Winkler, Elaine Mardis, Ravindra Uppaluri
Jazyk: angličtina
Rok vydání: 2015
Předmět:
Zdroj: Genomics Data, Vol 3, Iss C, Pp 61-62 (2015)
Druh dokumentu: article
ISSN: 2213-5960
DOI: 10.1016/j.gdata.2014.11.006
Popis: To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation sequencing (NGS) and gene expression microarray profiles to explore the genomic and transcriptional backgrounds of the differential MOC line phenotypes, as well as, the cross-species relevance of the model. Here we describe the comparative analysis of NGS (www.ncbi.nlm.nih.gov/biosample?LinkName=bioproject_biosample_all&from_uid=247825) and expression microarray (www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50041) data from the MOC lines and corresponding human data, as described in our recent publication [1].
Databáze: Directory of Open Access Journals