Gene Expression Network Reconstruction by LEP Method Using Microarray Data

Autor: Na You, Peng Mou, Ting Qiu, Qiang Kou, Huaijin Zhu, Yuexi Chen, Xueqin Wang
Jazyk: angličtina
Rok vydání: 2012
Předmět:
Zdroj: The Scientific World Journal, Vol 2012 (2012)
Druh dokumentu: article
ISSN: 1537-744X
DOI: 10.1100/2012/753430
Popis: Gene expression network reconstruction using microarray data is widely studied aiming to investigate the behavior of a gene cluster simultaneously. Under the Gaussian assumption, the conditional dependence between genes in the network is fully described by the partial correlation coefficient matrix. Due to the high dimensionality and sparsity, we utilize the LEP method to estimate it in this paper. Compared to the existing methods, the LEP reaches the highest PPV with the sensitivity controlled at the satisfactory level. A set of gene expression data from the HapMap project is analyzed for illustration.
Databáze: Directory of Open Access Journals