Correction: Mitochondrial genome sequence of Phytophthora sansomeana and comparative analysis of Phytophthora mitochondrial genomes
| Autor: | Plos Staff |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2020 |
| Předmět: |
Phytophthora
Mitochondrial DNA Science Bioenergetics Genome Complexity Biochemistry Microbiology Genome Genetics Non-coding RNA Gene Prediction Energy-Producing Organelles Sequence (medicine) Multidisciplinary biology Phytophthora sansomeana fungi Organisms Fungi food and beverages Biology and Life Sciences Eukaryota Computational Biology Cell Biology Genomics Comparative Genomics Genome Analysis biology.organism_classification Genome Annotation Mitochondria Nucleic acids Oomycetes Ribosomal RNA RNA Medicine Cellular Structures and Organelles Transfer RNA Ribosomes Research Article |
| Zdroj: | PLoS ONE, Vol 15, Iss 7, p e0236076 (2020) PLoS ONE |
| ISSN: | 1932-6203 |
| Popis: | Phytophthora sansomeana infects soybean and causes root rot. It was recently separated from the species complex P. megasperma sensu lato. In this study, we sequenced and annotated its complete mitochondrial genome and compared it to that of nine other Phytophthora species. The genome was assembled into a circular molecule of 39,618 bp with a 22.03% G+C content. Forty-two protein coding genes, 25 tRNA genes and two rRNA genes were annotated in this genome. The protein coding genes include 14 genes in the respiratory complexes, four ATP synthase genes, 16 ribosomal proteins genes, a tatC translocase gene, six conserved ORFs and a unique orf402. The tRNA genes encode tRNAs for 19 amino acids. Comparison among mitochondrial genomes of 10 Phytophthora species revealed three inversions, each covering multiple genes. These genomes were conserved in gene content with few exceptions. A 3' truncated atp9 gene was found in P. nicotianae. All 10 Phytophthora species, as well as other oomycetes and stramenopiles, lacked tRNA genes for threonine in their mitochondria. Phylogenomic analysis using the mitochondrial genomes supported or enhanced previous findings of the phylogeny of Phytophthora spp. |
| Databáze: | OpenAIRE |
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