Additional file 2 of The genome evolution and domestication of tropical fruit mango

Autor: Wang, Peng, Yingfeng Luo, Jianfeng Huang, Shenghan Gao, Guopeng Zhu, Zhiguo Dang, Jiangtao Gai, Yang, Meng, Zhu, Min, Huangkai Zhang, Xiuxu Ye, Aiping Gao, Xinyu Tan, Wang, Sen, Shuangyang Wu, Cahoon, Edgar, Beibei Bai, Zhichang Zhao, Li, Qian, Wei, Junya, Huarui Chen, Ruixiong Luo, Deyong Gong, Kexuan Tang, Zhang, Bing, Zhangguang Ni, Guodi Huang, Songnian Hu, Yeyuan Chen
Rok vydání: 2020
DOI: 10.6084/m9.figshare.11953143.v1
Popis: Additional file 2: Figure S1. The linear relation between the genomic assembly and the genetic map of mango. Figure S2. Comparisons of mango proteins among five annotation evidences. Figure S3. Frequency distributions of synonymous substitution rates (Ks) between homologous gene pairs in syntenic blocks. Figure S4. The ka/ks distribution of syntenic homologous genes retained from recent WGD. Figure S5. Appearance of a mango fruit for the variety Alphonso, demonstrating red flush of the peel. Figure S6. Phylogeny of CHS genes in mango, sweet orange and Arabidopsis. Figure S7. Phylogeny of CHS genes in Anacardiaceae with non-Anacardiaceae CHSs as outgroups. Figure S8. Phylogeny of CHS genes in Arabidopsis thaliana, Citrus sinensis, Mangifera indica, Pistacia vera, Sclerocarya birrea and Dimocarpus longan. Figure S9. Alignment of peptide sequences of CHS in mango and Arabidopsis. Figure S10. The percentage of ROH (>50 kb) in mango genomes for the Mangifera species and different cultivars. Figure S11. Relationship between the genomic percentage of ROH (>50 kb) and heterozygous rate.
Databáze: OpenAIRE