SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization
| Autor: | Thomas B. Kepler, John K. Tomfohr, M. Louise Markert, Min He, Blythe H. Devlin, Marcella Sarzotti |
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| Rok vydání: | 2005 |
| Předmět: |
Statistics and Probability
Computer science Interface (Java) Receptors Antigen T-Cell Information Storage and Retrieval computer.software_genre Biochemistry User-Computer Interface Upload Sequence Analysis Protein Computer Graphics Animals Humans Databases Protein Molecular Biology Java applet DNA Primers Internet Database Computational Biology Subject (documents) Sequence Analysis DNA computer.file_format Computer Science Applications Visualization Genes T-Cell Receptor Computational Mathematics ComputingMethodologies_PATTERNRECOGNITION Computational Theory and Mathematics Data analysis Database Management Systems Programming Languages Image file formats Raw data computer Software |
| Zdroj: | Bioinformatics. 21:3697-3699 |
| ISSN: | 1460-2059 1367-4803 |
| DOI: | 10.1093/bioinformatics/bti600 |
| Popis: | Summary: SpA is a web-accessible system for the management, visualization and statistical analysis of T-cell receptor spectratype data. Users upload data from their spectratype analyzers to SpA, which saves the raw data and user-defined supplementary covariates to a secure database. The statistical engine performs several data analyses and statistical summaries. The visualization engine displays spectratype histograms in a Java applet and in an image file suitable for download. All of these results are also saved to the database and remain accessible to the user. Additional statistical tools specific to the analysis of multiple spectratypes are also available through the SpA interface. Availability: The service is freely accessible via the web at http://www.duke.edu/~kepler/spa.html. Additional technical support and specialized statistical analysis and consultation are available by arrangement with the authors and, depending on the service requested, may be subject to fee. Contact: kepler@duke.edu |
| Databáze: | OpenAIRE |
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