Genome sequence of the cultivated cotton Gossypium arboreum
| Autor: | Xueyan Zhang, Zhiying Ma, Fengming Sun, Zhifang Li, Kun Liu, Cairui Lu, Guangyi Fan, Xinming Liang, Guoli Song, Weiqing Liu, Wenbin Chen, Richard G. Percy, Hengling Wei, Junyi Wang, Jun Wang, Caiyun Gou, Haihong Shang, John Z. Yu, Qin Li, Guiyin Zhang, Chengcheng Shi, Xun Xu, Fuguang Li, Youlu Yuan, Guanghui Xiao, Kunbo Wang, Shuxun Yu, Yu-Xian Zhu, Wuwei Ye, Russell J. Kohel, Changsong Zou |
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| Rok vydání: | 2014 |
| Předmět: |
Genome evolution
DNA Plant Retroelements media_common.quotation_subject Verticillium Gossypium Gossypium raimondii Genome Evolution Molecular Polyploidy Species Specificity Gene duplication Botany Genetics Phylogeny Disease Resistance Gene Library Plant Diseases media_common Whole genome sequencing Binding Sites Models Genetic biology Terminal Repeat Sequences Chromosome Mapping Sequence Analysis DNA Ethylenes biology.organism_classification Speciation Evolutionary biology Transcriptome Genome Plant |
| Zdroj: | Li, F, Fan, G, Wang, K, Sun, F, Yuan, Y, Song, G, Li, Q, Ma, Z, Lu, C, Zou, C, Chen, W, Liang, X, Shang, H, Liu, W, Shi, C, Xiao, G, Gou, C, Ye, W, Xu, X, Zhang, X, Wei, H, Li, Z, Zhang, G, Wang, J, Liu, K, Kohel, R J, Percy, R G, Yu, J Z, Zhu, Y-X, Wang, J & Yu, S 2014, ' Genome sequence of the cultivated cotton Gossypium arboreum ', Nature Genetics, vol. 46, no. 6, pp. 567-572 . https://doi.org/10.1038/ng.2987 |
| ISSN: | 1546-1718 1061-4036 |
| Popis: | The complex allotetraploid nature of the cotton genome (AADD; 2n = 52) makes genetic, genomic and functional analyses extremely challenging. Here we sequenced and assembled the Gossypium arboreum (AA; 2n = 26) genome, a putative contributor of the A subgenome. A total of 193.6 Gb of clean sequence covering the genome by 112.6-fold was obtained by paired-end sequencing. We further anchored and oriented 90.4% of the assembly on 13 pseudochromosomes and found that 68.5% of the genome is occupied by repetitive DNA sequences. We predicted 41,330 protein-coding genes in G. arboreum. Two whole-genome duplications were shared by G. arboreum and Gossypium raimondii before speciation. Insertions of long terminal repeats in the past 5 million years are responsible for the twofold difference in the sizes of these genomes. Comparative transcriptome studies showed the key role of the nucleotide binding site (NBS)-encoding gene family in resistance to Verticillium dahliae and the involvement of ethylene in the development of cotton fiber cells. |
| Databáze: | OpenAIRE |
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