SMART v1.0: A Database for Small Molecules with Functional Implications in Plants
| Autor: | Xiaojun Yao, Xiaoxue Dang, Yanming Nie, Xiaoyan An, Qinchang Liu, Shuai Zhu, Beilei Lei, Minggui Song, Chuang Ma, Runwen Qin, Xiyang Li |
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| Rok vydání: | 2021 |
| Předmět: |
Structure (mathematical logic)
Internet Database Databases Factual Simple Modular Architecture Research Tool Computer science Nearest neighbor search technology industry and agriculture Full text search Health Informatics Plants computer.software_genre Small molecule humanities General Biochemistry Genetics and Molecular Biology Computer Science Applications Visualization User-Computer Interface Web page Chemical genetics computer |
| Zdroj: | Interdisciplinary sciences, computational life sciences. 14(1) |
| ISSN: | 1867-1462 |
| Popis: | We developed SMART v1.0 ( http://smart.omicstudio.cloud ), the first database for small molecules with functional implications in plants. The SMART database is devoted to providing and managing small molecules and their associated structural data, chemoinformatic data, protein targets, pathways and induced phenotype/function information. Currently, SMART v1.0 encompasses 1218 unique small molecules which are involved in multiple biological pathways. SMART v1.0 is featured with user-friendly interfaces, through which pathway-centered visualization of small molecules can be efficiently performed, and multiple types of searches (i.e., text search, structure similarity search and sequence similarity search) can be conveniently conducted. SMART v1.0 is also specifically designed to be a small molecule-sharing database, allowing users to release their newly discovered small molecules to public via the Contribute webpage. The SMART database will facilitate the comprehensive understanding of small molecules in complex biological processes in plants. |
| Databáze: | OpenAIRE |
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