ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
| Autor: | C. del Val, C. Fladerer, Sándor Suhai, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Mechthild Falkenhahn, Peter Ernst |
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| Rok vydání: | 2007 |
| Předmět: |
Identification
computer.internet_protocol Annotation Biology Bioinformatics Database World Wide Web User-Computer Interface Software Protein Annotation Sequence Analysis Protein Server Computer Graphics Genetics Domain analysis Databases Protein Internet business.industry Suite Computational Biology Proteins Articles Interface Protein Structure Tertiary Systems Integration Genes The Internet business Sequence Alignment computer Algorithms Secondary structure prediction XML |
| Zdroj: | Digibug. Repositorio Institucional de la Universidad de Granada instname Nucleic Acids Research |
| ISSN: | 1362-4962 0305-1048 |
| Popis: | The wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics software. However, finding out which services exist, what they can or cannot do, how to use them and how to feed results from one service to the next one in the right format can be very time and resource consuming, especially for non-experts. Automating this task, we present a suite of protein annotation pipelines (tasks) developed at the German Cancer Research Centre (DKFZ) oriented to protein annotation by homology (ProtSweep), by domain analysis (DomainSweep), and by secondary structure elements (2Dsweep). The aim of these tasks is to perform an exhaustive structural and functional analysis employing a wide variety of methods in combination with the most updated public databases. The three servers are available for academic users at the HUSAR open server http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar/ The program of ‘Retorno de Investigadores de la Junta de Andalucia’ financed Dr C. del Val. Funding to pay the Open Access publication charges for this article was provided by Dep. Molecular Biophysics, Deutsches Krebsforschungszentrum. |
| Databáze: | OpenAIRE |
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