Comparison of texture-based classification and deep learning for plantar soft tissue histology segmentation

Autor: Yak-Nam Wang, William R. Ledoux, Eric Rombokas, Lynda Brady
Rok vydání: 2021
Předmět:
Zdroj: Comput Biol Med
ISSN: 0010-4825
Popis: Histomorphological measurements can be used to identify microstructural changes related to disease pathomechanics, in particular, plantar soft tissue changes with diabetes. However, these measurements are time-consuming and susceptible to sampling and human measurement error. We investigated two approaches to automate segmentation of plantar soft tissue stained with modified Hart's stain for elastin with the eventual goal of subsequent morphological analysis. The first approach used multiple texture- and color-based features with tile-wise classification. The second approach used a convolutional neural network modified from the U-Net architecture with fewer channel dimensions and additional downsampling steps. A hybrid color and texture feature, Fourier reduced histogram of uniform improved opponent color local binary patterns (f-IOCLBP), yielded the best feature-based segmentation, but still performed 3.6% worse on average than the modified U-Net. The texture-based method was sensitive to changes in illumination and stain intensity, and segmentation errors were often in large regions of single tissues or at tissue boundaries. The U-Net was able to segment small, few-pixel tissue boundaries, and errors were often trivial to clean up with post-processing. A U-Net approach outperforms hand-crafted features for segmentation of plantar soft tissue stained with modified Hart's stain for elastin.
Databáze: OpenAIRE
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