The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
| Autor: | Karl-Erich Jaeger, Maya Kunigo, Jessica Schneider, Joachim F. Ernst, Christoph Buerth, Sebastian Jaenicke, Alfred Pühler, Oliver Rupp, Karina Brinkrolf, Alexander Goesmann |
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| Jazyk: | angličtina |
| Rok vydání: | 2015 |
| Předmět: |
Genes
Fungal Level of ploidy Bioengineering Single-nucleotide polymorphism SNP (single Applied Microbiology and Biotechnology Genome Polymorphism Single Nucleotide DNA sequencing Ascomycota Sequence Homology Nucleic Acid nucleotide polymorphism) calling Cyberlindnera jadinii DNA Fungal Candida Genetics Whole genome sequencing Base Composition Ploidies biology Reproducibility of Results General Medicine Sequence Analysis DNA biology.organism_classification Flow Cytometry Diploidy Yeast Nuclear DNA Gene Ontology Genome sequence Ploidy Genome Fungal Candida utilis Biotechnology |
| DOI: | 10.1016/j.jbiotec.2015.06.423 |
| Popis: | The yeast Cyberlindnera jadinii is a close relative of Candida utilis that is being used in the food and feed industries. Here, we present the 12.7Mb genome sequence of C. jadinii strain CBS 1600 generated by next generation sequencing. The deduced draft genome sequence consists of seven large scaffolds analogous to the seven largest chromosomes of C. utilis. An automated annotation of the C jadinii genome identified 6147 protein-coding sequences. The level of ploidy for both genomes was analyzed by calling single nucleotide polymorphisms (SNPs) and was verified measuring nuclear DNA contents by florescence activated cell sorting (FACS). Both analyses determined the level of ploidy to diploid for C. jadinii and to triploid for C utilis. However, SNP calling for C. jadinii also identified scaffold regions that seem to be haploid, triploid or tetraploid. (C) 2015 Elsevier B.V. All rights reserved. |
| Databáze: | OpenAIRE |
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