Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

Autor:	Camilla Sekse, Hanna Karin Ilag, Thomas H A Haverkamp, Håkon Kaspersen, Øivind Øines, Jannice Schau Slettemeås
Jazyk:	angličtina
Rok vydání:	2021
Předmět:	0303 health sciences 030306 microbiology medicine.drug_class Pipeline (computing) Flow cell VDP::Medisinske Fag: 700::Basale medisinske odontologiske og veterinærmedisinske fag: 710 Computational biology Biology medicine.disease_cause Quinolone Genome VDP::Medical disciplines: 700::Basic medical dental and veterinary science disciplines: 710 03 medical and health sciences Immunology and Microbiology (miscellaneous) Minion Genetics medicine Molecular Biology Escherichia coli 030304 developmental biology
Popis:	In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::75380211af23f524dc896fe128dc1964 https://hdl.handle.net/10037/21430 Zobrazit plný text záznamu