The complete chloroplast genome sequence of wild service tree Sorbus torminalis (L.) Crantz

Autor:	Bartosz Ulaszewski, Jaroslaw Burczyk, Elżbieta Sandurska, Ewa Sztupecka
Rok vydání:	2017
Předmět:	0301 basic medicine Whole genome sequencing Genetics biology Phylogenetic tree Inverted repeat biology.organism_classification Genome Torminalis Sorbus torminalis 03 medical and health sciences 030104 developmental biology Gene Ecology Evolution Behavior and Systematics GC-content
Zdroj:	Conservation Genetics Resources. 9:419-422
ISSN:	1877-7260 1877-7252
Popis:	Sorbus torminalis is widely distributed tree species across Europe which shows interesting features from the genetic point of view and has high ecological values. Based on the whole genomic DNA we have assembled the complete 160,390 bp circular chloroplast genome of the species. The nucleotide share: 31.35% A, 18.61% C, 17.87% G, 32.12% T and 36.48% GC content is similar to those found in the Pyrus and Malus species. The genome is a standard quadripartite structure build from four subunits: large (88,029 bp) and small (19,547 bp) single copy unit and two inverted repeats (26,407 bp each). The genome contains 127 genes including: 83 protein-coding genes (77 unique), 36 tRNA genes (29 unique), and 8 rRNA genes (4 unique). Phylogenetic position of S. torminalis based on the whole chloroplast genome indicated that the species is phylogenetically closer to genus Malus than Pyrus.
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5452b9f229586d5672887a4c0770fbaf https://doi.org/10.1007/s12686-017-0701-9 Zobrazit plný text záznamu Full text from SpringerLink