Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition

Autor: Zhide Geng, Shoaib Ur Rehman, Furqan Ahmad, Muhammad Hammad Nadeem Tahir, Muhammad Sajjad, Ahsan Irshad, Muhammad Usman, Sajid Fiaz, Zulfiqar Ali, Muhammad Shees, Ghulam Qanmber
Rok vydání: 2021
Předmět:
Evolutionary Genetics
0106 biological sciences
0301 basic medicine
Physiology
Acclimatization
Gene Expression
Plant Science
Plant Roots
01 natural sciences
Genome
Gene Expression Regulation
Plant
Plant Resistance to Abiotic Stress
Flowering Plants
Plant Proteins
Data Management
Segmental duplication
Genetics
Zinc finger
Multidisciplinary
Ecology
biology
Eukaryota
Zinc Fingers
Agriculture
Phylogenetic Analysis
Genomics
Plants
Droughts
DNA-Binding Proteins
Phylogenetics
Plant Physiology
Medicine
Orthologous Gene
Research Article
Computer and Information Sciences
Science
In silico
Crops
Genome Complexity
03 medical and health sciences
Stress
Physiological
Plant-Environment Interactions
Plant Defenses
Evolutionary Systematics
Amino Acid Sequence
Gene
Taxonomy
Evolutionary Biology
Vascular Plants
Plant Ecology
Ecology and Environmental Sciences
Organisms
Biology and Life Sciences
Computational Biology
Plant Pathology
biology.organism_classification
Introns
Plant Leaves
030104 developmental biology
Seedlings
Glycine
Soybeans
Glycine soja
Sequence Alignment
Transcription Factors
Crop Science
010606 plant biology & botany
Zdroj: PLoS ONE
PLoS ONE, Vol 16, Iss 7, p e0253836 (2021)
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0253836
Popis: Vascular plant one-zinc-finger (VOZ) transcription factors regulate plant growth and development under drought conditions. Six VOZ transcription factors encoding genes exist in soybean genome (both in Glycine max and Glycine soja). Herein, GmVOZs and GsVOZs were identified through in silico analysis and characterized with different bioinformatics tools and expression analysis. Phylogenetic analysis classified VOZ genes in four groups. Sequence logos analysis among G. max and G. soja amino acid residues revealed higher conservation. Presence of stress related cis-elements in the upstream regions of GmVOZs and GsVOZs highlights their role in tolerance against abiotic stresses. The collinearity analysis identified 14 paralogous/orthologous gene pairs within and between G. max and G. soja. The Ka/Ks values showed that soybean VOZ genes underwent selection pressure with limited functional deviation arising from whole genome and segmental duplication. The GmVOZs and GsVOZs were found to express in roots and leaves at seedling stage. The qRT-PCR revealed that GmVOZs and GsVOZs transcripts can be regulated by abiotic stresses such as polyethylene glycol (PEG). The findings of this study will provide a reference to decipher physiological and molecular functions of VOZ genes in soybean.
Databáze: OpenAIRE
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