Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic
| Autor: | Rute Irgang, Guillermo Fernández-Negrete, Ruben Avendaño-Herrera, Derie Fuentes-Messina, Matías Poblete-Morales, Peter Kämpfer, Stefanie P. Glaeser |
|---|---|
| Přispěvatelé: | Publica |
| Rok vydání: | 2019 |
| Předmět: |
0106 biological sciences
0301 basic medicine chemistry.chemical_classification biology Fatty acid General Medicine biology.organism_classification 16S ribosomal RNA 010603 evolutionary biology 01 natural sciences Microbiology Genome 03 medical and health sciences Rock cod 030104 developmental biology Paracoccus chemistry Notothenia coriiceps Botany bacteria Taxonomy (biology) Gene Ecology Evolution Behavior and Systematics |
| Zdroj: | International Journal of Systematic and Evolutionary Microbiology. 69:2794-2800 |
| ISSN: | 1466-5034 1466-5026 |
| DOI: | 10.1099/ijsem.0.003557 |
| Popis: | An orange-pigmented, oxidase-positive bacterial strain (I-41R45(T)), isolated from the kidney of a black rock cod fish sampled in the Chilean Antarctic was studied in a polyphasic taxonomic investigation. Cells of the isolate were coccoid and stained Gram-negative. A comparison of the 16S rRNA gene sequence of strain I-41R45(T) with sequences of type strains of most closely related Paracoccus species showed highest sequence similarities to Paracoccus hibiscisoli (98.4 %), Paracoccus marcusii (98.3%), Paracoccus haeundaensis and Paracoccus carotinifaciens (both 98.2%). 16S rRNA gene sequence similarities to all other Paracoccus species were below 97%. The draft genome of strain I-41R45(T) had a size of 4.59 Mb with a DNA G+C content of 65.26 mol% and included the prediction and annotation of 4426 coding genes, 1973 protein-coding genes and 46 tRNAs. The fatty acid profile of strain I-41R45(T) consisted mainly of the major fatty acids C-18 : 1 omega 7c/omega 9t/omega 12t and C-18: 0, typical of the genus Paracoccus. DNA-DNA hybridizations between I-41R45(T) and type strains of P. hibiscisoli, P. marcusii and P. haeundaensis resulted in similarity values of 45% (reciprocal 26 %), 66% (reciprocal 61 %), and 29% (reciprocal 36 %), respectively. DNA-DNA hybridization results, together with the differentiating biochemical and chemotaxonomic properties, showed that strain I-41R45(T) represents a novel Paracoccus species, for which the name Paracoccus nototheniae sp. nov. (type strain I-41R45(T)=CCM 8875(T)=CIP 111632(T)), is proposed. |
| Databáze: | OpenAIRE |
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