Isolation and characterization of a crude oil degrading bacteria from formation water: comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains
| Autor: | Beiwen Zheng, Yuehui She, Zhengliang Wang, Xiawei Jiang, Fuchang Shu, Dujie Hou, Lujun Chai, Fan Zhang, Zhongzhi Zhang, Qing-feng Cui, Han-ping Dong |
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| Rok vydání: | 2015 |
| Předmět: |
General Veterinary
Strain (chemistry) Virulence Articles General Medicine Ochrobactrum Biology biology.organism_classification Genome General Biochemistry Genetics and Molecular Biology Microbiology Petroleum Plasmid Bacterial Proteins Species Specificity General Pharmacology Toxicology and Pharmaceutics Water Microbiology Ochrobactrum intermedium Prophage Bacteria |
| Zdroj: | Journal of Zhejiang University-SCIENCE B. 16:865-874 |
| ISSN: | 1862-1783 1673-1581 |
| DOI: | 10.1631/jzus.b1500029 |
| Popis: | In this study, we isolated an environmental clone of Ochrobactrum intermedium, strain 2745-2, from the formation water of Changqing oilfield in Shanxi, China, which can degrade crude oil. Strain 2745-2 is aerobic and rod-shaped with optimum growth at 42 °C and pH 5.5. We sequenced the genome and found a single chromosome of 4 800 175 bp, with a G+C content of 57.63%. Sixty RNAs and 4737 protein-coding genes were identified: many of the genes are responsible for the degradation, emulsification, and metabolizing of crude oil. A comparative genomic analysis with related clinical strains (M86, 229E, and LMG3301(T)) showed that genes involved in virulence, disease, defense, phages, prophages, transposable elements, plasmids, and antibiotic resistance are also present in strain 2745-2. |
| Databáze: | OpenAIRE |
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