Melanoma Cell Colony Expansion Parameters Revealed by Approximate Bayesian Computation
| Autor: | Christopher C. Drovandi, Graeme J. Pettet, Anthony N. Pettitt, Brenda N. Vo |
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| Jazyk: | angličtina |
| Rok vydání: | 2015 |
| Předmět: |
Skin Neoplasms
QH301-705.5 Coefficient of variation Cell Posterior probability Monte Carlo method Biology Thermal diffusivity Models Biological Cellular and Molecular Neuroscience Bayes' theorem Cell Movement Cell Line Tumor Statistics Image Interpretation Computer-Assisted Genetics medicine Cell Adhesion Applied mathematics Humans Computer Simulation Neoplasm Invasiveness Biology (General) Molecular Biology Melanoma Ecology Evolution Behavior and Systematics Cell Proliferation Models Statistical Ecology Mathematical model Bayes Theorem medicine.anatomical_structure Computational Theory and Mathematics Modeling and Simulation Approximate Bayesian computation Research Article |
| Zdroj: | PLoS Computational Biology PLoS Computational Biology, Vol 11, Iss 12, p e1004635 (2015) |
| ISSN: | 1553-7358 1553-734X |
| Popis: | In vitro studies and mathematical models are now being widely used to study the underlying mechanisms driving the expansion of cell colonies. This can improve our understanding of cancer formation and progression. Although much progress has been made in terms of developing and analysing mathematical models, far less progress has been made in terms of understanding how to estimate model parameters using experimental in vitro image-based data. To address this issue, a new approximate Bayesian computation (ABC) algorithm is proposed to estimate key parameters governing the expansion of melanoma cell (MM127) colonies, including cell diffusivity, D, cell proliferation rate, λ, and cell-to-cell adhesion, q, in two experimental scenarios, namely with and without a chemical treatment to suppress cell proliferation. Even when little prior biological knowledge about the parameters is assumed, all parameters are precisely inferred with a small posterior coefficient of variation, approximately 2–12%. The ABC analyses reveal that the posterior distributions of D and q depend on the experimental elapsed time, whereas the posterior distribution of λ does not. The posterior mean values of D and q are in the ranges 226–268 µm2h−1, 311–351 µm2h−1 and 0.23–0.39, 0.32–0.61 for the experimental periods of 0–24 h and 24–48 h, respectively. Furthermore, we found that the posterior distribution of q also depends on the initial cell density, whereas the posterior distributions of D and λ do not. The ABC approach also enables information from the two experiments to be combined, resulting in greater precision for all estimates of D and λ. Author Summary Quantifying the underlying parameters that drive the expansion of melanoma cell colonies such as the cell diffusivity, cell proliferation rate and cell-to-cell adhesion strength can improve our understanding of melanoma biology and its response to treatment. We combine a simulation-based model of collective cell spreading with a novel Bayesian computational algorithm to estimate these parameters from carefully chosen summaries of collective cell image data and to quantify their associated uncertainty across different experimental conditions. Our summarisation of the image data leads to precise estimates for all parameters. Our analysis reveals that the cell diffusivity and the cell-to-cell adhesion strength estimates depend on experimental elapsed time. Furthermore, the cell-to-cell adhesion strength estimate appears to depend on the initial cell density, whereas the cell proliferation rate estimate is approximately the same over different experimental conditions. |
| Databáze: | OpenAIRE |
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