BMC Research Notes
| Autor: | Brendan Joyce, Aleksey Y. Ogurtsov, Danny Lee, Gelio Alves, Yi-Kuo Yu, Alex Rubio |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2018 |
| Předmět: |
0301 basic medicine
Proteomics Source code Java Proteome RAID Computer science Tandem mass spectrometry media_common.quotation_subject lcsh:Medicine computer.software_genre General Biochemistry Genetics and Molecular Biology law.invention 03 medical and health sciences User-Computer Interface law Code (cryptography) Humans lcsh:Science (General) Databases Protein lcsh:QH301-705.5 computer.programming_language Graphical user interface media_common Internet Database business.industry Peptide identification Suite lcsh:R Computational Biology General Medicine Software package Visualization Research Note 030104 developmental biology lcsh:Biology (General) Protein identification business computer Software lcsh:Q1-390 |
| Zdroj: | BMC Research Notes BMC Research Notes, Vol 11, Iss 1, Pp 1-7 (2018) |
| Popis: | Objective RAId is a software package that has been actively developed for the past 10 years for computationally and visually analyzing MS/MS data. Founded on rigorous statistical methods, RAId’s core program computes accurate E-values for peptides and proteins identified during database searches. Making this robust tool readily accessible for the proteomics community by developing a graphical user interface (GUI) is our main goal here. Results We have constructed a graphical user interface to facilitate the use of RAId on users’ local machines. Written in Java, RAId_GUI not only makes easy executions of RAId but also provides tools for data/spectra visualization, MS-product analysis, molecular isotopic distribution analysis, and graphing the retrieval versus the proportion of false discoveries. The results viewer displays and allows the users to download the analyses results. Both the knowledge-integrated organismal databases and the code package (containing source code, the graphical user interface, and a user manual) are available for download at https://www.ncbi.nlm.nih.gov/CBBresearch/Yu/downloads/raid.html. Electronic supplementary material The online version of this article (10.1186/s13104-018-3289-6) contains supplementary material, which is available to authorized users. |
| Databáze: | OpenAIRE |
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