Structure of the Lasso Peptide Isopeptidase Identifies a Topology for Processing Threaded Substrates
| Autor: | Satish K. Nair, Chuhan Zong, Mikhail O. Maksimov, A. James Link, Jonathan R. Chekan, Joseph D. Koos |
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| Rok vydání: | 2016 |
| Předmět: |
0301 basic medicine
Stereochemistry Protein domain Peptide Biochemistry Cocrystal Article Catalysis 03 medical and health sciences Colloid and Surface Chemistry Protein Domains Lasso (statistics) Carbon-Nitrogen Lyases Hydrolase Side chain chemistry.chemical_classification Isopeptide bond biology Chemistry Active site General Chemistry Combinatorial chemistry 030104 developmental biology biology.protein Peptides Protein Processing Post-Translational |
| Zdroj: | Journal of the American Chemical Society. 138:16452-16458 |
| ISSN: | 1520-5126 0002-7863 |
| DOI: | 10.1021/jacs.6b10389 |
| Popis: | Lasso peptides are a class of bioactive ribosomally synthesized and post-translationally modified peptides (RiPPs), with a threaded knot structure that is formed by an isopeptide bond attaching the N-terminus of the peptide to a side chain carboxylate. Some lasso peptide biosynthetic clusters harbor an enzyme that specifically hydrolyzes the isopeptide bond to yield the linear peptide. We describe here the 2.4 Å resolution structure of a lasso peptide isopeptidase revealing a topologically novel didomain architecture consisting of an open β-propeller appended to an α/β hydrolase domain. The 2.2 Å resolution cocrystal structure of an inactive variant in complex with a lasso peptide reveals deformation of the substrate, and reorganization of the enzyme active site, which exposes and orients the isopeptide bond for hydrolysis. Structure-based mutational analysis reveals how this enzyme recognizes the lasso peptide substrate by shape complementarity rather than through sequence specificity. The isopeptidase gene can be used to facilitate genome mining, as a network-based mining strategy queried with this sequence identified 87 putative lasso peptide biosynthetic clusters, 65 of which have not been previously described. Lastly, we validate this mining approach by heterologous expression of two clusters encoded within the genome of Asticcaucalis benevestitus, and demonstrate that both clusters produce lasso peptides. |
| Databáze: | OpenAIRE |
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