A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex

Autor: Peter R. Johnston, Deanna A. Sutton, Pedro W. Crous, Seogchan Kang, R. P. Baayen, David M. Geiser, Patrick Colyer, Kerstin Skovgaard, Matthew G. Cromey, Monica L. Elliott, Sean Bithell, Ron Riley, Randy C. Ploetz, Theo van der Lee, Cécile Gueidan, H. Corby Kistler, Kerry O'Donnell, Jean H. Juba, Michael James Davis, Anthony E. Glenn, Stacy Sink, Brice A. J. Sarver, Antonio Moretti, Cees Waalwijk, Hye-Seon Kim, Nicholas C. Zitomer
Jazyk: angličtina
Rok vydání: 2009
Předmět:
0106 biological sciences
fragment-length-polymorphisms
computer.software_genre
01 natural sciences
ribosomal dna
Conserved sequence
Intergenic region
Peptide Elongation Factor 1
Fusarium
DNA
Fungal
Mycological Typing Techniques
Conserved Sequence
Phylogeny
f-sp cubense
Genetics
0303 health sciences
Cross Infection
Database
Phylogenetic tree
EPS-4
Fungal genetics
genetic diversity
Plants
intergenic spacer region
phylogenetic diversity
Databases
Nucleic Acid
nectria-haematococca
Sequence analysis
Biology
Microbiology
DNA
Ribosomal
Evolution
Molecular
03 medical and health sciences
Species Specificity
Phylogenetics
DNA
Ribosomal Spacer
RNA
Ribosomal
18S
Humans
discontinuous distribution
Ribosomal DNA
Plant Diseases
Biointeracties and Plant Health
Base Sequence
030306 microbiology
EF-1 alpha
Mycotoxins
Genealogical discordance
IGS rDNA
Sequence Analysis
DNA
Ribosomal RNA
vegetative compatibility groups
DNA Fingerprinting
Laboratorium voor Phytopathologie
Mycoses
Laboratory of Phytopathology
fungus fusarium
PRI Biointeractions en Plantgezondheid
computer
Sequence Alignment
010606 plant biology & botany
Zdroj: Fungal Genetics and Biology
Fungal Genetics and Biology 46 (2009) 12
Fungal genetics and biology
46 (2009): 936–948. doi:10.1016/j.fgb.2009.08.006
info:cnr-pdr/source/autori:O'Donnell, K(O'Donnell, Kerry)1; Gueidan, C (Gueidan, Cecile)2; Sink, S (Sink, Stacy)1; Johnston, PR (Johnston, Peter R.)3; Crous, PW (Crous, Pedro W.)2; Glenn, A (Glenn, Anthony)4; Riley, R (Riley, Ron)4; Zitomer, NC (Zitomer, Nicholas C.)4; Colyer, P (Colyer, Patrick)5; Waalwijk, C (Waalwijk, Cees)6; van der Lee, T (van der Lee, Theo)6; Moretti, A (Moretti, Antonio)7; Kang, S (Kang, Seogchan)8; Kim, HS (Kim, Hye-Seon)8; Geiser, DM (Geiser, David M.)8; Juba, JH (Juba, Jean H.)8; Baayen, RP (Baayen, Robert P.)9; Cromey, MG (Cromey, Matthew G.)10; Bithell, S (Bithell, Sean)10; Sutton, DA (Sutton, Deanna A.)11; Skovgaard, K (Skovgaard, Kerstin)12; Ploetz, R (Ploetz, Randy)13; Kistler, HC (Kistler, H. Corby)14; Elliott, M (Elliott, Monica)15; Davis, M (Davis, Mike)16; Sarver, BAJ (Sarver, Brice A. J.)/titolo:A Two-locus DNA Sequence Database for Typing Plant and Human Pathogens Within the Fusarium oxysporum Species Complex./doi:10.1016%2Fj.fgb.2009.08.006/rivista:Fungal genetics and biology (Print)/anno:2009/pagina_da:936/pagina_a:948/intervallo_pagine:936–948/volume:46
Fungal Genetics and Biology, 46(12), 936-948
Fungal Genetics and Biology, 46(12), 936-948. Academic Press
ISSN: 1087-1845
DOI: 10.1016/j.fgb.2009.08.006
Popis: We constructed a two-locus database, comprising partial translation elongation factor (EF-1 alpha) gene sequences and nearly full-length sequences of the nuclear ribosomal intergenic spacer region (IGS rDNA) for 850 isolates spanning the phylogenetic breadth of the Fusarium oxysporum species complex (FOSC). Of the 850 isolates typed, 101 EF-1 alpha, 203 IGS rDNA, and 256 two-locus sequence types (STs) were differentiated. Analysis of the combined dataset suggests that two-thirds of the STs might be associated with a single host plant. This analysis also revealed that the 26 STs associated with human mycoses were genetically diverse, including several which appear to be nosocomial in origin. A congruence analysis, comparing partial EF-1 alpha and IGS rDNA bootstrap consensus, identified a significant number of conflicting relationships dispersed throughout the bipartitions, suggesting that some of the IGS rDNA sequences may be non-orthologous. We also evaluated enniatin, fumonisin and moniliformin mycotoxin production in vitro within a phylogenetic framework
Databáze: OpenAIRE
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