ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection

Autor: Robert J. Klose, Neil P. Blackledge, Hannah K. Long
Jazyk: angličtina
Rok vydání: 2016
Předmět:
5mC
5-methylcytosine

Models
Molecular

ESC
embryonic stem cell

AF9
ALL1–fused gene from chromosome 9 protein

DPY-30
dosage compensation protein 30

FBXL19
F-box and leucine-rich repeat protein 19

HDAC
histone deacetylase

TET
ten-eleven translocation

Biochemical Society Annual Symposium No. 80
Biochemistry
PHD
plant homeodomain

MLL
mixed lineage leukaemia protein

0302 clinical medicine
DNA/metabolism
MBD
methyl-CpG-binding domain

RFTS
replication foci-targeting sequence

5hmC
5-hydroxymethylcytosine

Epigenomics
Genetics
0303 health sciences
DNA methylation
KDM
lysine demethylase

RbBP5
retinoblastoma-binding protein 5

YY1
Yin and Yang 1

SEC
super-elongation complex

Zinc Fingers
Protein Binding/physiology
Chromatin
CpG Islands/genetics
DNA-Binding Proteins
CFP1
CxxC finger protein 1

CpG site
DNA demethylation
shRNA
short hairpin RNA

CGI
CpG island

CGBP
CpG-binding protein

transcription
ChIP-seq
chromatin immunoprecipitation sequencing

BAH
bromo-adjacent homology

Protein Binding
DNA Methylation/genetics
DNA-Binding Proteins/chemistry
WDR
WD40 repeat

S1
HMG-box
Molecular Sequence Data
S7
ZF-CxxC
zinc finger-CxxC

Biology
RING
really interesting new gene

Chromatin/metabolism
Protein Structure
Tertiary/genetics

ENL
eleven-nineteen leukaemia

03 medical and health sciences
IDAX
inhibition of the Dvl and axin complex protein

Epigenetics of physical exercise
DNMT1
DNA methyltransferase 1

Humans
Amino Acid Sequence
030304 developmental biology
JmjC
Jumonji C

Zinc Fingers/genetics
epigenetics
ASH2L
absent
small or homeotic 2-like

RNAPII
RNA polymerase II

DNA
PRC
polycomb group repressive complex

Protein Structure
Tertiary

Methyl-CpG-binding domain
SETD1
SET domain 1

Differentially methylated regions
CpG island
CpG Islands
030217 neurology & neurosurgery
Zdroj: Long, H K, Blackledge, N P & Klose, R J 2013, ' ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection ', Biochemical Society Transactions, vol. 41, no. 3, pp. 727-40 . https://doi.org/10.1042/BST20130028
Biochemical Society Transactions
Popis: Vertebrate DNA can be chemically modified by methylation of the 5 position of the cytosine base in the context of CpG dinucleotides. This modification creates a binding site for MBD (methyl-CpG-binding domain) proteins which target chromatin-modifying activities that are thought to contribute to transcriptional repression and maintain heterochromatic regions of the genome. In contrast with DNA methylation, which is found broadly across vertebrate genomes, non-methylated DNA is concentrated in regions known as CGIs (CpG islands). Recently, a family of proteins which encode a ZF-CxxC (zinc finger-CxxC) domain have been shown to specifically recognize non-methylated DNA and recruit chromatin-modifying activities to CGI elements. For example, CFP1 (CxxC finger protein 1), MLL (mixed lineage leukaemia protein), KDM (lysine demethylase) 2A and KDM2B regulate lysine methylation on histone tails, whereas TET (ten-eleven translocation) 1 and TET3 hydroxylate methylated cytosine bases. In the present review, we discuss the most recent advances in our understanding of how ZF-CxxC domain-containing proteins recognize non-methylated DNA and describe their role in chromatin modification at CGIs. © 2013 The Author(s).
Databáze: OpenAIRE