Isolation and characterization of 14 microsatellite markers for Rhizophora mucronata (Rhizophoraceae) and their potential use in range-wide population studies
| Autor: | Sankararamasubramanian Halasya Meenakshisundaram, Emiko Oguri, Orlex B. Yllano, M. Nazre Saleh, Bayu Adjie, Tadashi Kajita, Norhaslinda Binti Malekal, Severino G. Salmo, Noriaki Murakami, Edward L. Webb, Takeshi Asakawa, Erwin Riyanto Ardli, Yasuyuki Watano, Onrizal, Nguyen Xuan Tung, Sarawood Sungkaew, Alison K. S. Wee, Shigeyuki Baba, Koji Takayama, Yoshimi Shinmura, Khin Khin Soe |
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| Rok vydání: | 2012 |
| Předmět: |
Linkage disequilibrium
Genetic diversity education.field_of_study Rhizophora mucronata biology Population Rhizophoraceae Locus (genetics) biology.organism_classification Evolutionary biology Botany Genetics Polymorphic Microsatellite Marker Microsatellite education Ecology Evolution Behavior and Systematics |
| Zdroj: | Conservation Genetics Resources. 4:951-954 |
| ISSN: | 1877-7260 1877-7252 |
| DOI: | 10.1007/s12686-012-9681-y |
| Popis: | A set of 14 new microsatellite markers was developed for mangrove species Rhizophora mucronata (Rhizophoraceae) by using pyrosequencing. Fifty-six samples from 9 populations of R. mucronata in the Indo-West Pacific region were genotyped; all loci were polymorphic, with the number of alleles ranging from 2 to 9. The mean expected heterozygosity per locus was 0.16 in a population from Sabah, no significant linkage disequilibrium was found among loci, and significant deviation from Hardy–Weinberg equilibrium was found in 3 loci. The polymorphic microsatellite markers with samples covering most of the species’ distribution range can be applied in genetic diversity studies covering a broad geographical range of the species. |
| Databáze: | OpenAIRE |
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