Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
| Autor: | Steve Ndikumana, Ivan de la Providencia, Sébastien Roy, Hélène San Clemente, Shingo Miyauchi, Alan Kuo, Eric C. H. Chen, Bernard Henrissat, Emmanuelle Morin, Elodie Drula, Igor V. Grigoriev, Denis Beaudet, Christophe Roux, Francis Martin, Nicolas Corradi, Adrian Pelin, Nianwu Tang, Mathieu Hainaut, Julie Viala |
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| Rok vydání: | 2019 |
| Předmět: |
0106 biological sciences
0301 basic medicine Rhizophagus irregularis Comparative genomics Mutualism (biology) biology Obligate Physiology Plant Science 15. Life on land Orphan gene biology.organism_classification 01 natural sciences Genome 03 medical and health sciences 030104 developmental biology Evolutionary biology Gene family Gene 010606 plant biology & botany |
| Zdroj: | New Phytologist. 222:1584-1598 |
| ISSN: | 1469-8137 0028-646X |
| Popis: | Glomeromycotina is a lineage of early diverging fungi that establish arbuscular mycorrhizal (AM) symbiosis with land plants. Despite their major ecological role, the genetic basis of their obligate mutualism remains largely unknown, hindering our understanding of their evolution and biology. We compared the genomes of Glomerales (Rhizophagus irregularis, Rhizophagus diaphanus, Rhizophagus cerebriforme) and Diversisporales (Gigaspora rosea) species, together with those of saprotrophic Mucoromycota, to identify gene families and processes associated with these lineages and to understand the molecular underpinning of their symbiotic lifestyle. Genomic features in Glomeromycotina appear to be very similar with a very high content in transposons and protein-coding genes, extensive duplications of protein kinase genes, and loss of genes coding for lignocellulose degradation, thiamin biosynthesis and cytosolic fatty acid synthase. Most symbiosis-related genes in R. irregularis and G. rosea are specific to Glomeromycotina. We also confirmed that the present species have a homokaryotic genome organisation. The high interspecific diversity of Glomeromycotina gene repertoires, affecting all known protein domains, as well as symbiosis-related orphan genes, may explain the known adaptation of Glomeromycotina to a wide range of environmental settings. Our findings contribute to an increasingly detailed portrait of genomic features defining the biology of AM fungi. |
| Databáze: | OpenAIRE |
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