| Popis: |
When this paper was first published the artwork for Figures 5 and 6 were switched in error. They are correctly printed below:[Figure presented] Fig. 5 – Sequence alignments of ceratoplatanin and Sm1/Epl1 orthologs. The sequences used to generate the alignment are: six Trichoderma sequences (Tr, T. reesei XP_006970000.1; Ta_Epl1, T. atroviride XP_013937770; Tasp_Epl1, T. asperellum CAL80753.1; Tv_Sm1, T. virens XP_013959806.1; Tvir_Epl1 T. viride CAL80756; Th_Snod-Prot1, T. harzianum KKP05841.1), ceratoplatanin itself (Ceratocystis platani AGQ22226.1), and predicted Sm1/Epl1 orthologs from other Sordariomycetes (Fo_SnodProt1, Fusarium oxysporum XP_018240137; Nc_CCG-14, Neurospora crassa XP_958708.1; Mo_SnodProt1, Magnaporthe oryzae XP_003710181.1; Ct_Epl1, Colletotrichum tofieldiae KZL71046.1; Ci_Epl1, Colletotrichum incanum KZL84107.1). The alignment was generated by MUSCLE at www.phylogeny. fr and plotted by EMBO MView online tool at http://www.ebi.ac.uk/Tools/msa/mview/; colour coding is by identity and amino acid chemical properties.[Figure presented] Fig. 6 – Similarity of some Trichoderma secreted proteins to expansins. Domain analyses of: a typical plant expansin (Zea mays NP_001288510.1 expansin-B1 precursor), T. reesei swollenin (CAB92328.1), ceratoplatanin (Ceratocystis fimbriata, AGQ22233.1), T. virens Sm1 (XP_013959806.1), and T. virens MRSP1 (XP_013952052.1). The maps are shown in descending order with respect to their expansin-like properties, from a plant expansin down to MRSP1, whose only hint of similarity to expansins is the double j/b-barrel (DPBB_1) fold (expansin Domain 1, grey). Prediction of domain structures: for expansin B1 and swollenin, Prosite (http://prosite.expasy.org/); for ceratoplatanin and Sm1, Pfam (CP domain is apparently not in the Prosite database); for MRSP1, coordinates generated by JGI's automated pipeline were taken from the protein page (Prosite and Pfam scans did not detect the DPBB_1 fold; which was originally detected by a combination of other methods (see Horwitz et al. (2013)). Combined graphics were generated by the Prosite domain drawing tool (via ExPasy). |
Full Text from ScienceDirect