Complete Genome Sequencing of Acinetobacter baumanniiStrain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11

Autor: Wibberg, Daniel, Salto, Ileana P., Eikmeyer, Felix G., Maus, Irena, Winkler, Anika, Nordmann, Patrice, Pühler, Alfred, Poirel, Laurent, Schlüter, Andreas
Zdroj: Antimicrobial Agents and Chemotherapy; February 2018, Vol. 62 Issue: 5
Abstrakt: ABSTRACTMultidrug-resistant (MDR) Acinetobacter baumanniistrains appeared as serious emerging nosocomial pathogens in clinical environments and especially in intensive care units (ICUs). A. baumanniistrain K50, recovered from a hospitalized patient in Kuwait, exhibited resistance to carbapenems and additionally to ciprofloxacin, chloramphenicol, sulfonamides, amikacin, and gentamicin. Genome sequencing revealed that the strain possesses two plasmids, pK50a (79.6 kb) and pK50b (9.5 kb), and a 3.75-Mb chromosome. A. baumanniiK50 exhibits an average nucleotide identity (ANI) of 99.98% to the previously reported Iraqi clinical isolate AA-014, even though the latter strain lacked plasmid pK50a. Strain K50 belongs to sequence type 158 (ST158) (Pasteur scheme) and ST499 (Oxford scheme). Plasmid pK50a is a member of the Aci6 (replication group 6 [RG6]) group of Acinetobacterplasmids and carries a conjugative transfer module and two antibiotic resistance gene regions. The transposon Tn2008carries the carbapenemase gene blaOXA-23, whereas a class 1 integron harbors the resistance genes blaGES-11, aacA4, dfrA7, qacEΔ1, and sul1, conferring resistance to all β-lactams and reduced susceptibility to carbapenems and resistance to aminoglycosides, trimethoprim, quaternary ammonium compounds, and sulfamethoxazole, respectively. The class 1 integron is flanked by MITEs (miniature inverted-repeat transposable elements) delimiting the element at its insertion site.
Databáze: Supplemental Index