Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.

Autor:	Renton AI; The University of Queensland, Queensland Brain Institute, St Lucia, Brisbane, Queensland, Australia. angie.renton23@gmail.com.; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia. angie.renton23@gmail.com., Dao TT; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia., Johnstone T; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia., Civier O; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia., Sullivan RP; The University of Sydney, School of Biomedical Engineering, Sydney, New South Wales, Australia., White DJ; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia., Lyons P; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia., Slade BM; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia., Abbott DF; The Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Victoria, Australia., Amos TJ; School of Life Science and Technology, University of Electronic Science and Technology, Chengdu, China., Bollmann S; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia., Botting A; Australian Research Data Commons (ARDC), Sydney, New South Wales, Australia., Campbell MEJ; School of Psychological Sciences, University of Newcastle, Newcastle, New South Wales, Australia.; Hunter Medical Research Institute Imaging Centre, Newcastle, New South Wales, Australia., Chang J; The University of Queensland, School of Biomedical Sciences, St Lucia, Brisbane, Queensland, Australia., Close TG; The University of Sydney, School of Biomedical Engineering, Sydney, New South Wales, Australia., Dörig M; Integrative Spinal Research, Department of Chiropractic Medicine, Balgrist University Hospital, University of Zurich, Zurich, Switzerland., Eckstein K; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia., Egan GF; The Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, Victoria, Australia.; Monash Biomedical Imaging, Monash University, Melbourne, Victoria, Australia., Evas S; School of Psychology, University of Adelaide, Adelaide, South Australia, Australia.; Human Health, Health & Biosecurity, CSIRO, Adelaide, South Australia, Australia., Flandin G; Wellcome Centre for Human Neuroimaging, University College London, London, UK., Garner KG; School of Psychology, University of New South Wales, Sydney, New South Wales, Australia.; The University of Queensland, School of Psychology, St Lucia, Brisbane, Queensland, Australia., Garrido MI; Melbourne School of Psychological Sciences, he University of Melbourne, Melbourne, Victoria, Australia.; Graeme Clark Institute for Biomedical Engineering, The University of Melbourne, Melbourne, Victoria, Australia., Ghosh SS; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Otolaryngology - Head and Neck Surgery, Harvard Medical School, Boston, MA, USA., Grignard M; GIGA CRC In-Vivo Imaging, University of Liège, Liège, Belgium., Halchenko YO; Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA., Hannan AJ; The Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Melbourne, Victoria, Australia., Heinsfeld AS; Department of Psychology, Center for Perceptual Systems, Institute for Neuroscience, Center For Learning and Memory, The University of Texas at Austin, Austin, TX, USA., Huber L; National Institute of Mental Health (NIMH), National Institutes Health, Bethesda, MD, USA., Hughes ME; Centre for Mental Health & Brain Sciences, Swinburne University of Technology, Hawthorn, Victoria, Australia., Kaczmarzyk JR; Department of Biomedical Informatics, Stony Brook University, New York, NY, USA.; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, New York, NY, USA., Kasper L; BRAIN-TO Lab, Krembil Brain Institute, University Health Network, Toronto, Ontario, Canada.; Translational Neuromodeling Unit, Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Zurich, Switzerland., Kuhlmann L; Department of Data Science and AI, Faculty of Information Technology, Monash University, Melbourne, Victoria, Australia., Lou K; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.; Department of Biomedical Engineering, Southern University of Science and Technology, Shenzhen, China., Mantilla-Ramos YJ; Grupo Neuropsicología y Conducta (GRUNECO), Facultad de Medicina, Universidad de Antioquia, Medellín, Colombia., Mattingley JB; The University of Queensland, Queensland Brain Institute, St Lucia, Brisbane, Queensland, Australia.; The University of Queensland, School of Psychology, St Lucia, Brisbane, Queensland, Australia., Meier ML; Integrative Spinal Research, Department of Chiropractic Medicine, Balgrist University Hospital, University of Zurich, Zurich, Switzerland., Morris J; Australian Research Data Commons (ARDC), Sydney, New South Wales, Australia., Narayanan A; School of Computer Science, The University of Auckland, Auckland, New Zealand., Pestilli F; Department of Psychology, Center for Perceptual Systems, Institute for Neuroscience, Center For Learning and Memory, The University of Texas at Austin, Austin, TX, USA., Puce A; Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA., Ribeiro FL; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia., Rogasch NC; The Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, Victoria, Australia.; Discipline of Psychiatry, Adelaide Medical School, University of Adelaide, Adelaide, South Australia, Australia.; Hopwood Centre for Neurobiology, Lifelong Health Theme, South Australian Health and Medical Research Institute (SAHMRI), Adelaide, South Australia, Australia., Rorden C; McCausland Center for Brain Imaging, Department of Psychology, University of South Carolina, Columbia, SC, USA., Schira MM; School of Psychology, University of Wollongong, Wollongong, New South Wales, Australia., Shaw TB; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.; The University of Queensland, Centre for Advanced Imaging, St Lucia, Brisbane, Queensland, Australia.; Department of Neurology, Royal Brisbane and Women's Hospital, Brisbane, Queensland, Australia., Sowman PF; Macquarie University, School of Psychological Sciences, Sydney, New South Wales, Australia., Spitz G; Department of Neuroscience, Central Clinical School, Faculty of Medicine, Nursing and Health Sciences, Monash University, Melbourne, Victoria, Australia.; Monash-Epworth Rehabilitation Research Centre, Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, Victoria, Australia., Stewart AW; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia.; ARC Training Centre for Innovation in Biomedical Imaging Technology, The University of Queensland, Brisbane, Queensland, Australia., Ye X; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia., Zhu JD; Macquarie University, School of Psychological Sciences, Sydney, New South Wales, Australia., Narayanan A; The University of Queensland, Centre for Advanced Imaging, St Lucia, Brisbane, Queensland, Australia., Bollmann S; The University of Queensland, School of Electrical Engineering and Computer Science, St Lucia, Brisbane, Queensland, Australia. s.bollmann@uq.edu.au.; The University of Queensland, Centre for Advanced Imaging, St Lucia, Brisbane, Queensland, Australia. s.bollmann@uq.edu.au.; ARC Training Centre for Innovation in Biomedical Imaging Technology, The University of Queensland, Brisbane, Queensland, Australia. s.bollmann@uq.edu.au.; Queensland Digital Health Centre, The University of Queensland, Brisbane, Queensland, Australia. s.bollmann@uq.edu.au.
Jazyk:	angličtina
Zdroj:	Nature methods [Nat Methods] 2024 May; Vol. 21 (5), pp. 804-808. Date of Electronic Publication: 2024 Jan 08.
DOI:	10.1038/s41592-023-02145-x
Abstrakt:	Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud. (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)
Databáze:	MEDLINE
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