| Autor: |
Harris EY; Department of Computer Science, University of California, Riverside, CA 92521, USA. elenah@cs.ucr.edu, Ponts N, Levchuk A, Roch KL, Lonardi S |
| Jazyk: |
angličtina |
| Zdroj: |
Bioinformatics (Oxford, England) [Bioinformatics] 2010 Feb 15; Vol. 26 (4), pp. 572-3. Date of Electronic Publication: 2009 Dec 22. |
| DOI: |
10.1093/bioinformatics/btp706 |
| Abstrakt: |
Summary: We present a new, accurate and efficient tool for mapping short reads obtained from the Illumina Genome Analyzer following sodium bisulfite conversion. Our tool, BRAT, supports single and paired-end reads and handles input files containing reads and mates of different lengths. BRAT is faster, maps more unique paired-end reads and has higher accuracy than existing programs. The software package includes tools to end-trim low-quality bases of the reads and to report nucleotide counts for mapped reads on the reference genome. |
| Databáze: |
MEDLINE |
| Externí odkaz: |
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