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pro vyhledávání: '"viral populations"'
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Publikováno v:
Инфекция и иммунитет, Vol 11, Iss 1, Pp 42-56 (2021)
Molecular phylogenetics, particularly statistical phylogenetics, is widely used to solve the fundamental and applied problems in virology. Bayesian, or statistical, phylogenetic methods, which came into practice 10—15 years ago, markedly expanded t
Externí odkaz:
https://doaj.org/article/bdf9b4826b1841e1813418dcca94a37b
Autor:
Jean Delmotte, Cristian Chaparro, Richard Galinier, Julien de Lorgeril, Bruno Petton, Pierre-Louis Stenger, Jeremie Vidal-Dupiol, Delphine Destoumieux-Garzon, Yannick Gueguen, Caroline Montagnani, Jean-Michel Escoubas, Guillaume Mitta
Publikováno v:
Frontiers in Microbiology, Vol 11 (2020)
Juvenile Pacific oysters (Crassostrea gigas) are subjected to recurrent episodes of mass mortalities that constitute a threat for the oyster industry. This mortality syndrome named “Pacific Oyster Mortality Syndrome” (POMS) is a polymicrobial dis
Externí odkaz:
https://doaj.org/article/c285e0c500754cbe8ec79d4f15be88cc
Autor:
Miguel Guzmán, Héctor Hidalgo
Publikováno v:
Animals, Vol 10, Iss 11, p 2058 (2020)
Infectious bronchitis virus (IBV) remains one of the most important diseases impacting poultry today. Its high adaptive capacity, attributable to the high mutation rate associated with its ssRNA(+), is one of its more important features. While biosec
Externí odkaz:
https://doaj.org/article/046df17f15f244ffaa5098a3b19072e1
Autor:
David J. King, Graham Freimanis, Lidia Lasecka-Dykes, Amin Asfor, Paolo Ribeca, Ryan Waters, Donald P. King, Emma Laing
Publikováno v:
Viruses, Vol 12, Iss 10, p 1187 (2020)
High-throughput sequencing such as those provided by Illumina are an efficient way to understand sequence variation within viral populations. However, challenges exist in distinguishing process-introduced error from biological variance, which signifi
Externí odkaz:
https://doaj.org/article/d1036efccba94d11a66b4fb4761e7d1a
Publikováno v:
Viruses, Vol 12, Iss 9, p 1038 (2020)
Bluetongue virus (BTV) is an arbovirus that has been associated with dramatic epizootics in both wild and domestic ruminants in recent decades. As a segmented, double-stranded RNA virus, BTV can evolve via several mechanisms due to its genomic struct
Externí odkaz:
https://doaj.org/article/7a19fa312ed24c6583a2183bf6ca851c
Autor:
Ulrik Fahnøe, Anders Gorm Pedersen, Camille Melissa Johnston, Richard J. Orton, Dirk Höper, Martin Beer, Jens Bukh, Graham J. Belsham, Thomas Bruun Rasmussen
Publikováno v:
Viruses, Vol 11, Iss 10, p 932 (2019)
Vaccines against classical swine fever have proven very effective in protecting pigs from this deadly disease. However, little is known about how vaccination impacts the selective pressures acting on the classical swine fever virus (CSFV). Here we us
Externí odkaz:
https://doaj.org/article/b70e86b1e930458da8315d25fd77f2b7
Publikováno v:
mSystems
mSystems, Vol 6, Iss 2 (2021)
mSystems, Vol 6, Iss 2 (2021)
Viruses are ubiquitous and abundant in the oceans, and viral metagenomes (viromes) have been investigated extensively via several large-scale ocean sequencing projects. However, there have not been any systematic viromic studies in estuaries. Here, w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d420562aa0d9918e1a3fa04d25dfbe9a
http://europepmc.org/articles/PMC8546989
http://europepmc.org/articles/PMC8546989
Autor:
Martin Beer, Richard J. Orton, Dirk Höper, Thomas Bruun Rasmussen, Anders Gorm Pedersen, Ulrik Fahnøe, Camille Melissa Johnston, Jens Bukh, Graham J. Belsham
Publikováno v:
Viruses
Viruses, Vol 11, Iss 10, p 932 (2019)
Fahnøe, U, Pedersen, A G, Johnston, C M, Orton, R J, Höper, D, Beer, M, Bukh, J, Belsham, G & Rasmussen, T B 2019, ' Virus Adaptation and Selection Following Challenge of Animals Vaccinated against Classical Swine Fever Virus ', Viruses, vol. 11, no. 10, 932 . https://doi.org/10.3390/v11100932
Volume 11
Issue 10
Fahnøe, U, Pedersen, A G, Johnston, C M, Orton, R J, Höper, D, Beer, M, Bukh, J, Belsham, G J & Rasmussen, T B 2019, ' Virus adaptation and selection following challenge of animals vaccinated against classical swine fever virus ', Viruses, vol. 11, no. 10, 932 . https://doi.org/10.3390/v11100932
Viruses, Vol 11, Iss 10, p 932 (2019)
Fahnøe, U, Pedersen, A G, Johnston, C M, Orton, R J, Höper, D, Beer, M, Bukh, J, Belsham, G & Rasmussen, T B 2019, ' Virus Adaptation and Selection Following Challenge of Animals Vaccinated against Classical Swine Fever Virus ', Viruses, vol. 11, no. 10, 932 . https://doi.org/10.3390/v11100932
Volume 11
Issue 10
Fahnøe, U, Pedersen, A G, Johnston, C M, Orton, R J, Höper, D, Beer, M, Bukh, J, Belsham, G J & Rasmussen, T B 2019, ' Virus adaptation and selection following challenge of animals vaccinated against classical swine fever virus ', Viruses, vol. 11, no. 10, 932 . https://doi.org/10.3390/v11100932
Vaccines against classical swine fever have proven very effective in protecting pigs from this deadly disease. However, little is known about how vaccination impacts the selective pressures acting on the classical swine fever virus (CSFV). Here we us
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6bd3a7716551d25f9c855fb210125d3
http://europepmc.org/articles/PMC6833067
http://europepmc.org/articles/PMC6833067
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 15, Iss, Pp 388-395 (2017)
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal
We propose a random forest classifier for detecting rare variants from sequencing errors in Next Generation Sequencing (NGS) data from viral populations. The method utilizes counts of varying length of k-mers from the reads of a viral population to t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::545803491fcc5b572c5d4af9cadce2dc
https://doi.org/10.1016/j.csbj.2017.07.001
https://doi.org/10.1016/j.csbj.2017.07.001