Zobrazeno 1 - 10
of 132
pro vyhledávání: '"van der Gulik, A."'
Autor:
Peter T.S. van der Gulik, Martijn Egas, Ken Kraaijeveld, Nina Dombrowski, Astrid T. Groot, Anja Spang, Wouter D. Hoff, Jenna Gallie
Publikováno v:
RNA Biology, Vol 20, Iss 1, Pp 48-58 (2023)
Automated genome annotation is essential for extracting biological information from sequence data. The identification and annotation of tRNA genes is frequently performed by the software package tRNAscan-SE, the output of which is listed for selected
Externí odkaz:
https://doaj.org/article/b6cf357509a1483d9cdcedc7f024e378
Akademický článek
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Autor:
Buhrman, Harry, van der Gulik, Peter T. S., Klau, Gunnar W., Schaffner, Christian, Speijer, Dave, Stougie, Leen
The genetic code has a high level of error robustness. Using values of hydrophobicity scales as a proxy for amino acid character, and the Mean Square measure as a function quantifying error robustness, a value can be obtained for a genetic code which
Externí odkaz:
http://arxiv.org/abs/1309.4589
We model and discuss advantages of pan-editing, the complex way of expressing mitochondrial genes in kinetoplastids. The rapid spread and preservation of pan-editing seems to be due to its concomitant fragment dispersal. Such dispersal prevents losin
Externí odkaz:
http://arxiv.org/abs/1307.1163
Publikováno v:
Journal of Theoretical Biology 261 (2009) 531-539
The issues we attempt to tackle here are what the first peptides did look like when they emerged on the primitive earth, and what simple catalytic activities they fulfilled. We conjecture that the early functional peptides were short (3 to 8 amino ac
Externí odkaz:
http://arxiv.org/abs/0909.2832
Autor:
Buhrman, Harry, van der Gulik, Peter T. S., Kelk, Steven M., Koolen, Wouter M., Stougie, Leen
The genetic code has been shown to be very error robust compared to randomly selected codes, but to be significantly less error robust than a certain code found by a heuristic algorithm. We formulate this optimisation problem as a Quadratic Assignmen
Externí odkaz:
http://arxiv.org/abs/0909.1442
Akademický článek
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Autor:
van der Gulik, Peter
A primordial genetic code is proposed, having only four codons assigned, GGC meaning glycine, GAC meaning aspartate/glutamate, GCC meaning alanine-like and GUC meaning valine-like. Pathways of ambiguity reduction enlarged the codon repertoire with CU
Externí odkaz:
http://arxiv.org/abs/0711.0700
Publikováno v:
BMC Evolutionary Biology, Vol 17, Iss 1, Pp 1-5 (2017)
Abstract Background Recently, important discoveries regarding the archaeon that functioned as the “host” in the merger with a bacterium that led to the eukaryotes, its “complex” nature, and its phylogenetic relationship to eukaryotes, have be
Externí odkaz:
https://doaj.org/article/4a0f1c31069745eea0194795486fe14a
Publikováno v:
Biological Reviews, 98(2), 584-602
During the last century enormous progress has been made in the understanding of biological diversity, involving a dramatic shift from macroscopic to microscopic organisms. The question now arises as to whether the Natural System introduced by Carl Li
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3418105d5f65cc0eb336ba56e39a22f5
https://ir.cwi.nl/pub/32499
https://ir.cwi.nl/pub/32499