The Complete Genome Sequence of Lactobacillus bulgaricus Reveals Extensive and Ongoing Reductive Evolution

Autor: van de Guchte, M., Penaud, S., Grimaldi, C., Barbe, V., Bryson, K., Nicolas, P., Robert, C., Oztas, S., Mangenot, S., Couloux, A., Loux, V., Dervyn, R., Bossy, R., Bolotin, A., Batto, J.-M., Walunas, T., Gibrat, J.-F., Bessières, P., Weissenbach, J., Ehrlich, S. D., Maguin, E.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2006 Jun . 103(24), 9274-9279.

Externí odkaz: https://www.jstor.org/stable/30051933

Chatten in taakgericht MVT onderwijs: Effect op doeltaalgebruik en ervaringen van leerlingen

Autor: van de Guchte, M., Rijlaarsdam, G.

Publikováno v: Levende Talen Tijdschrift, 19(4), 3-14

Taakgericht taalonderwijs stelt motiverende, levensechte taaltaken centraal, waarin leerlingen met elkaar communiceren in de doeltaal. Toch constateren docenten moderne vreemde talen dat in taakgericht onderwijs leerlingen tijdens een groot deel van

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=narcis______::21aec36da0e54c97bf20c7ae2e885913
https://dare.uva.nl/personal/pure/en/publications/chatten-in-taakgericht-mvt-onderwijs(ca61a5ff-3507-43ca-8eb7-c19e9801cc77).html

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Autor: Nielsen, H.B., Almeida, M., Sierakowska Juncker, A., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D.R., Gautier, L., Pedersen, A.G., Le Chatelier, E., Pelletier, E., Bonde, I., Nielsen, T., Manichanh, C., Arumugam, M., Batto, J.M., Quintanilha dos Santos, M.B., Blom, N., Borruel, N., Burgdorf, K.S., Boumezbeur, F., Casellas, F., Doré, J., Dworzynski, P., Guarner, F., Hansen, T., Hildebrand, F., Kaas, R.S., Kennedy, S., Kristiansen, K., Kultima, J.R., Leonard, P., Levenez, F., Lund, O., Moumen, B., Le Paslier, D., Pons, N., Pedersen, O., Prifti, E., Qin, J., Raes, J., Sørensen, S., Tap, J., Tims, S., Ussery, D.W., Yamada, T., Jamet, A., Mérieux, A., Cultrone, A., Torrejon, A., Quinquis, B., Brechot, C., Delorme, C., M'Rini, C., de Vos, W.M., Maguin, E., Varela, E., Guedon, E., Gwen, F., Haimet, F., Artiguenave, F., Vandemeulebrouck, G., Denariaz, G., Khaci, G., Blottière, H., Knol, J., Weissenbach, J., van Hylckama Vlieg, J.E., Torben, J., Parkhil, J., Turner, K., van de Guchte, M., Antolin, M., Rescigno, M., Kleerebezem, M., Derrien, M., Galleron, N., Sanchez, N., Grarup, N., Veiga, P., Oozeer, R., Dervyn, R., Layec, S., Bruls, T., Winogradski, Y., Zoetendal, E.G., Renault, D., Sicheritz-Ponten, Bork, P., Wang, J., Brunak, S., Ehrlich, S.D.

Publikováno v: Nature Biotechnology
Nature Biotechnology, Nature Publishing Group, 2014, 32, pp.822-828. ⟨10.1038/nbt.2939⟩
Nature Biotechnology, 2014, 32, pp.822-828. ⟨10.1038/nbt.2939⟩
Nature Biotechnology, Nature Publishing Group, 2014, 32 (8), pp.822-828. ⟨10.1038/nbt.2939⟩
Nature Biotechnology 32 (2014)
Nature Biotechnology, 32, 822-828
Nielsen, H B, Almeida, M, Juncker, A S, Rasmussen, S, Li, J H, Sunagawa, S, Plichta, D R, Gautier, L, Pedersen, A G, Le Chatelier, E, Pelletier, E, Bonde, I, Nielsen, T, Manichanh, C, Arumugam, M, Batto, J M, dos Santos, M B Q, Blom, N, Borruel, N, Burgdorf, K S, Boumezbeur, F, Casellas, F, Dore, J, Dworzynski, P, Guarner, F, Hansen, T, Hildebrand, F, Kaas, R S, Kennedy, S, Kristiansen, K, Kultima, J R, Leonard, P, Levenez, F, Lund, O, Moumen, B, Le Paslier, D, Pons, N, Pedersen, O, Prifti, E, Qin, J J, Raes, J, Sorensen, S, Tap, J, Tims, S, Ussery, D W, Yamada, T, Renault, P, Sicheritz-Ponten, T, Bork, P, Wang, J, Brunak, S, Ehrlich, S D & Meta, H I T C 2014, ' Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes ', Nature Biotechnology, vol. 32, no. 8, pp. 822-828 . https://doi.org/10.1038/nbt.2939

Most current approaches for analyzing metagenomic data rely on comparisons to reference genomes, but the microbial diversity of many environments extends far beyond what is covered by reference databases. De novo segregation of complex metagenomic da

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::121e69b6466f2fc83a6a9b77a47c9d05
https://doi.org/10.1038/nbt.2939

Enterotypes of the human gut microbiome

Autor: Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, Takuji, Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K., Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H. B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E. G., Wang, J., Guarner, F., Pedersen, O., de Vos, W. M., Brunak, S., Dor�, J., Antol匤, M., Artiguenave, F., Blottiere, H. M., Almeida, M., Brechot, C., Cara, C., Chervaux, C., Cultrone, A., Delorme, C., Denariaz, G., Dervyn, R., Foerstner, K. U., Friss, C., van de Guchte, M., Guedon, E., Haimet, F., Huber, W., van Hylckama-Vlieg, J., Jamet, A., Juste, C., Kaci, G., Knol, J., Lakhdari, O., Layec, S., Le Roux, K., Maguin, E., M駻ieux, A., Melo Minardi, R., M'rini, C., Muller, J., Oozeer, R., Parkhill, J., Renault, P., Rescigno, M., Sanchez, N., Sunagawa, S., Torrejon, A., Turner, K., Vandemeulebrouck, G., Varela, E., Winogradsky, Y., Zeller, G., Weissenbach, J., Ehrlich, S. D., Bork, P., Consortium, MetaHIT

Publikováno v: Nature
Nature, Nature Publishing Group, 2011, 473 (7346), pp.174-180. ⟨10.1038/nature09944⟩
Arumugam, M, Raes, J, Pelletier, E, Le Paslier, D, Yamada, T, Mende, D R, Fernandes, G R, Tap, J, Bruls, T, Batto, J M, Bertalan, M, Borruel, N, Casellas, F, Fernandez, L, Gautier, L, Hansen, T, Hattori, M, Hayashi, T, Kleerebezem, M, Kurokawa, K, Leclerc, M, Levenez, F, Manichanh, C, Nielsen, H B, Nielsen, T, Pons, N, Poulain, J, Qin, J J, Sicheritz-Ponten, T, Tims, S, Torrents, D, Ugarte, E, Zoetendal, E G, Wang, J, Guarner, F, Pedersen, O, de Vos, W M, Brunak, S, Dore, J, Weissenbach, J, Ehrlich, S D, Bork, P & Meta, H I T C 2011, ' Enterotypes of the human gut microbiome ', Nature, vol. 473, no. 7346, pp. 174-180 .
Nature, 2013, 473 (7346), pp.174-180. ⟨10.1038/nature09944⟩
Nature; Vol 473
Nature, 473(7346), 174-180
Nature 473 (2011) 7346

International audience; Our knowledge of species and functional composition of the human gut microbiome is rapidly increasing, but it is still based on very few cohorts and little is known about variation across the world. By combining 22 newly seque

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2bd3de9fbd4b76999b879eacb2b54a2
https://hal.inrae.fr/hal-03372110

Discovering lactic acid bacteria by genomics

Autor: Klaenhammer, T, Altermann, E, Arigoni, F, Bolotin, A, Breidt, F, Broadbent, J, Cano, R, Chaillou, S, Deutscher, J, Gasson, M, van de Guchte, M, Guzzo, J, Hartke, A, Hawkins, T, Hols, P, Hutkins, R, Kleerebezem, M, Kok, J, Kuipers, O, Maguin, E, McKay, L, Mills, D, Nauta, A, Overbeek, R, Pel, H, Pridmore, D, Saier, M, van Sinderen, D, Sorokin, A, Steele, J, O'Sullivan, D, de Vos, W, Weimer, B, Zagorec, M, Siezen, R

Publikováno v: Antonie Van Leeuwenhoek: International Journal of General and Molecular Microbiology, 82(1-4), 29-58. SPRINGER

This review summarizes a collection of lactic acid bacteria that are now undergoing genomic sequencing and analysis. Summaries are presented on twenty different species, with each overview discussing the organisms fundamental and practical significan

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=narcis______::8191cc36265dd1fd8d62c2ffde56fd29
https://research.rug.nl/en/publications/b6454eae-882d-4d4a-b11b-4132a8073832